Protein Info for mRNA_5452 in Rhodosporidium toruloides IFO0880

Name: 13820
Annotation: HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF00026: Asp" amino acids 157 to 470 (314 residues), 253.6 bits, see alignment E=5e-79 PF14543: TAXi_N" amino acids 159 to 312 (154 residues), 42 bits, see alignment E=1.9e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>mRNA_5452 HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630 (Rhodosporidium toruloides IFO0880)
MRTAATLAFVASLSLLPSALASDEAAGIAIPLQKRNADDESRQLTKRDDTVDWSVLESHV
ASAKAKYKATADIFERIHGHRPLQAGPPSKRDLAAAEEKPFYGFRGSNPIGRSSISRVLF
KDRTKTSSAAATATSTPVSKATAASESLTSYGDSLWAGSLSIGTPAQSFVCDFDTGSADL
WMPSSQCTSSACSGKHKYDASASSSSVPVTSKTFSVSYGDGSSSSGPVYQDTVTVAGLVA
TGQTFGAATTLSSSFANDPEDGLAGLAFPSISDLQSPTLFQTLWNEGKVAANQFSFRLSS
GNAAPSELYLGGMNPAHYVAGTTQWAPVTSQSYWVVTGATAVNGKPVSAVNNFNAIIDTG
TTLIVIPTAAAQSFWAAVPNSAPYSGGGGYYTFPCASPPSITFSFGGSTKAWPLQYLNLG
RVSSGSTLCVGSIVGQDVGINAWIVGDSFLKSSVYTTFDMGANRVGFSQAQ