Protein Info for mRNA_5457 in Rhodosporidium toruloides IFO0880

Name: 13825
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 transmembrane" amino acids 63 to 80 (18 residues), see Phobius details amino acids 104 to 125 (22 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 158 to 183 (26 residues), see Phobius details amino acids 194 to 215 (22 residues), see Phobius details amino acids 227 to 247 (21 residues), see Phobius details amino acids 295 to 319 (25 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 391 to 414 (24 residues), see Phobius details amino acids 426 to 446 (21 residues), see Phobius details amino acids 461 to 479 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 101 to 450 (350 residues), 28.8 bits, see alignment E=6e-11 PF07690: MFS_1" amino acids 103 to 439 (337 residues), 106.9 bits, see alignment E=1.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (517 amino acids)

>mRNA_5457 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MNTHDAEKAIDTTAHYEETSARPGPRFADGDEKAGSSRYASSETGLEHVKASKTAERRLV
RKLDVVILPMAVLLYLSAYLDRGAMGNAKLMGLEKTVLGNVDVRYSIALMCFYITYIVFS
IPGTLFAKQFLPSTTIACGALVWSIATTCQAATHNPAALYVCRLFIGVGEAFFGQAMALY
LSFWYTKQELAKRIGLFISAGSLAGAFSGLIAAGVSKINSSIDNWRILFLVEGLPSLLLA
IIVFFFLPSRPDSSKFLNEDERTIACTRLNAESNGEVGTGIDWAAVRYAFKDWKIYVLAL
AYSAMNLTLGSISGFLPTIVKGLGYSNTDAQLYSVPPYACALGVMLLLTGISDRLKSRGV
FVMLVYCIGIVGWAILYGVSPIHVSKGGLRARYFACCCLASAGYANIPLIMAWVSNNSPS
ESQRAVGLGMLNSVGQCLSILASFLFPKAEGPRFVKGESVNLAFQAFGLVIALGMTLYFR
WENARRDKREGGQPVKGMRVEGVATAYDQAVGYRYVA