Protein Info for mRNA_5486 in Rhodosporidium toruloides IFO0880

Name: 13854
Annotation: K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 686 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 384 to 409 (26 residues), see Phobius details PF02225: PA" amino acids 242 to 325 (84 residues), 32.9 bits, see alignment E=1e-11 PF13639: zf-RING_2" amino acids 541 to 584 (44 residues), 39 bits, see alignment 1.6e-13 PF00097: zf-C3HC4" amino acids 542 to 583 (42 residues), 21.6 bits, see alignment 3.2e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (686 amino acids)

>mRNA_5486 K15695 RNF103, KF1 E3 ubiquitin-protein ligase RNF103 (Rhodosporidium toruloides IFO0880)
MDHPTGLAGPPLAPRRRFAHHLPALVAVGIVLFVAFAGLSGDEQFSESAIARQDAADGAL
HVQRSGSHGDSDASRDEAGRSTTRQLRVGLAGAESGKGRQSILLSDEPNDELAFAVQHTS
PLARPPLHFTGLHDKADSRRAFWHMIRVKLDGLATSVGDLILGLFGFDEDEWFDFEGEGG
AEAFSLEGGGLSTWSESSIYVERSNSLHPSRPSSFGPHIVNEPLRGLLFPIDIAAPTDDY
GCTAKPVAPAPFTPSKPWIALVQRGQCPFSDKVRVAQVYGAMAVVFGDESEAEGGISGGH
GLLTPWSPDNTDDIAIPSVFVSRASYVSLLRTWSDEQEIAEAEPTVMEDGSTQTNVVLGD
DAGAEKPKKEYVGLEVVLSKEEMLAWPLLDLLFILLFLPSLLTLVTVFIQRVRAVRAQKA
ERAPKDAVARLPVFRWGESEKPASPAPKAGSDAARAGTDEEREVGIAQVPVSIAPEPTEQ
TSLLHSDTAPAARTTSLAHRITSRLPASISRRLPASLRPPDSPTQLNVGPPPFRRYPSIT
ECPFCLCDFEPGDLVMSLPCGHLFHAQEVTEWLEEQKGVCPVCRMSVLAPPQEPGAAALV
AEGEARAANEAGEEGVPALSPTDGASVLIQPPSRPSSHTISAEPSTSTSPIGVRPHPLSR
HQSAASPLASSSSVPIDAPTTRDDSA