Protein Info for mRNA_5488 in Rhodosporidium toruloides IFO0880

Name: 13856
Annotation: K01078 E3.1.3.2 acid phosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 470 to 490 (21 residues), see Phobius details PF04185: Phosphoesterase" amino acids 74 to 309 (236 residues), 113.6 bits, see alignment E=6.4e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (491 amino acids)

>mRNA_5488 K01078 E3.1.3.2 acid phosphatase (Rhodosporidium toruloides IFO0880)
MLSTAVLTAALAAAPAYAAVAQSFVPPSSSPTQQSSTYTGKSNSTLPKSPVVAGKSFDRF
ISIVLENTDYATSPSSPVFQNLSSQGVLMNGYYGVTHPSEPNYLAMATGSFFGMHGDAFY
AFPQNVSTVADLLEAKNISWASYQENMPYDGFTGFNYTEKNYISGTGNYTYYVRKHNPTI
LADSVAGNPERALRHRNFNDFAADIQADALPQWMFITPNLVNDGHDTTIDFQSQWLEYFL
YPLLADERFNNNRTLILLTYDENETYEENNQVYTIALGKGIPKELVGTTDNTYYTHYSSL
STVEANWGLGSLGRGDTNKTLANVYSWVANATGYQNNGLTNSSSNLPLTNLTGIFPGFAN
DEMWTPILAPNMSAIGAGGGPVFAGNGTNMQLTSWDQPINWTARGEPNPAHTDPGFDYSS
GSLVIKPSASSSSSAAGPSATGSVGQGGNSQGGNQNGNAQGSNVQAKSGAVSVVVPFAGA
LAAVAGVVALL