Protein Info for mRNA_5489 in Rhodosporidium toruloides IFO0880

Name: 13857
Annotation: KOG1263 Multicopper oxidases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 626 transmembrane" amino acids 28 to 54 (27 residues), see Phobius details amino acids 588 to 594 (7 residues), see Phobius details PF07732: Cu-oxidase_3" amino acids 114 to 225 (112 residues), 137.5 bits, see alignment E=3.3e-44 PF00394: Cu-oxidase" amino acids 239 to 398 (160 residues), 112.9 bits, see alignment E=2.6e-36 PF07731: Cu-oxidase_2" amino acids 492 to 596 (105 residues), 120.8 bits, see alignment E=5.6e-39

Best Hits

Predicted SEED Role

"Multicopper oxidase" in subsystem Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (626 amino acids)

>mRNA_5489 KOG1263 Multicopper oxidases (Rhodosporidium toruloides IFO0880)
MTGSIDDKHSLEGSETASPRPDSHHRRWIRTLAIAAGGLAVLAVGLGVGLGVGLRLHSRD
RAVATSVNGTNSTSADEGRVLAQPSSNFVLKGQAAMAKEPATMRYYEFLLEERTGSPDGS
DKPMLVVNGMYPGPTIEVNNDDRVVVNVTNAMSNASAIHWHGLFQRGTPWFDGTNSVSQC
GIPPGHSFLYNFTLDTFVGTTWWHSHYSTQYTDGLSGAFIVYNRSETLPSTPSIDGELSI
QLSDLYHRFSSDLLTQYLSTNGMTGAGYSGTTQGNEPVPDAGTINGIGQWGDSTPSYTNF
TLAQNSTYRLRISNHGSFAASRFSVDNHTLTVVEADGVLVDPYEVSGLVVQVAQRYSVIL
RTNQTAGAYWMRHEVQQDAFTYTEPGFQGTQLGVIRYGVDNSTIPSSALVSSDPGSGSSL
PDLDSTALVPYVPESPPNATFSTYVTVSMQNTGNNQWLSFVNSTSWEPLQGKATLLSGYG
FNEIGTSQADSQLIVTIPDPTSGTQVVDLYVQNYDDGDHPFHLHGYKPWMMGQGQGRYQG
QELNTKNPMRRDTFVLPAYSWTILRFVADNPGMWFFHCHLTWHMASGLAMQFLVLPNATT
SLLASAPPVLQEQCKTMQTLGQAVVG