Protein Info for mRNA_5492 in Rhodosporidium toruloides IFO0880

Name: 13860
Annotation: K15436 TRPO3, MTR10 transportin-3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 920 PF03810: IBN_N" amino acids 28 to 94 (67 residues), 24.1 bits, see alignment 2.7e-09 PF08389: Xpo1" amino acids 100 to 246 (147 residues), 57.8 bits, see alignment E=1.4e-19

Best Hits

KEGG orthology group: None (inferred from 46% identity to lbc:LACBIDRAFT_181790)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (920 amino acids)

>mRNA_5492 K15436 TRPO3, MTR10 transportin-3 (Rhodosporidium toruloides IFO0880)
MADASLQAVVEALNILYTNPDREAKEKANAWLGEFQKSNEAWATAQMILFAPDAPLEPKL
FAAQTFRTKITYDLATLPQEQLIPLRDSLLTALRSFASGPRVVLTQICIALADIALQLTK
AQWDDPVASMIEMFGKEPAMAAALLEFFQVLAEEYNSNYKINVNNDLGREGDATVKRGEQ
VIGLLSMYVQAPGITAGLHNQCFATLGAWLRTGQIRAGSLAGTPVLASAFSSLSNDQLFD
NAVDVLVDIIHETQELQENIAIIQEIMPRLTALGANLANEDTREDDDKMRGYCRIFVEAG
EWYEPLIVQHPDTFLPLVELIKQCAAYDGLDVVGITLNFWYRLSQGIHRAGPNPSMAPLL
QVFADLVGIVIRHLHFPDDSTPLTGEERDTFRDFRHKIGDTLKDCCKVLGAGPCLQQAYD
VIARAVAAGDAVRWQDVEAPLFSMRSMGAMIDVHDNELVPKIMELLPKLPQHPRIRYAAI
LVIGRYTHWTQQHPDLIQFQLPYVSAGFDDTDPEVLAAASQTMKYLCKDCPEHLVAFLPR
LHTFIQTVSSKLKGEDLLDLCAAIAHILIAMPPSQIPSALSTFLMPNVEIVHALVSQDAP
AAKDQIRKAVEALERIDVYLAIIGHIPDGLPDSCLATCQQVWSVMDALIAKYGSNPAVAD
RATIALRRGLVFFDEMAFAVAPAILDRLSSAFEQAPASGYLWITGKVVQQFAPRQDAGFD
AVVKSAFERESNKVFELLQSTPPSQIPDVLDDYVHLVQALIESAPQHIFTSPAFPAAFQC
TLTALTLPSPRIVLAALDAVRAVVGHDSLHPETNGSFASPSHQAAFPTYATAIRAIIEST
ATQLIQLLLDVLVGGGEDEPYNVLTILRLLSIQFPTVLAQTVPAAVELLPARAAGPADKA
EFLAKFNGCVRSLPSWGLSG