Protein Info for mRNA_5499 in Rhodosporidium toruloides IFO0880

Name: 13867
Annotation: KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF00106: adh_short" amino acids 75 to 226 (152 residues), 68.9 bits, see alignment E=6.3e-23 PF08659: KR" amino acids 77 to 169 (93 residues), 26.9 bits, see alignment E=6.7e-10 PF13561: adh_short_C2" amino acids 81 to 228 (148 residues), 43.4 bits, see alignment E=4.8e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (373 amino acids)

>mRNA_5499 KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (Rhodosporidium toruloides IFO0880)
MGDSTLALLSLLCLLSCSADHPLPHSTHLPVSPPTMGILANLLVRLCPDTDLSYTIFPPA
STYDPERDVPDLTGKVVIVTGANVGIGYETAKQLVLKNAKVYIACRDETKAREAIRKLEA
FVKERQTKGQLDFLKLDLSDLDAVKKAAEEFLAKEKQLDLLFCNAGVMKCPPDLLTKQNY
DLQWGTNVVGHHLFCILLLPALETSFTTTGTKPRIMHTSSSAHKMAPGETGIEWSTLEGG
EERDRMLEKWGGLTASWKLYGQSKLGNILTSTILSTRYPYLISTSLHPGGIATDLQRHLR
GLEAQVTSWLLWPVEMGAQTQLWGATSEEGEGLGGKYLWPWARLGRPDKRALNPDTQKKV
EEYLDAQVKPWVG