Protein Info for mRNA_5504 in Rhodosporidium toruloides IFO0880

Name: 13872
Annotation: KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF05046: Img2" amino acids 76 to 156 (81 residues), 77 bits, see alignment E=5.7e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>mRNA_5504 KOG4034 Uncharacterized conserved protein NOF (Neighbor of FAU) (Rhodosporidium toruloides IFO0880)
MQRFRPLFIALPTMRTRAAPPSALPFLRFSSSSPSPASNPSPAPAAPAEPKASSALSQDP
AGGFTKPKKEGQQPELTYFVPRTSFGELPVYTDYKQQGRRVLTVIRKTRGQLTDLQHDIR
KYIPESHPYIRPAAGALVLRGNWAREVKEFLWSKGF