Protein Info for mRNA_5512 in Rhodosporidium toruloides IFO0880

Name: 13880
Annotation: HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 708 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 681 to 701 (21 residues), see Phobius details PF00571: CBS" amino acids 100 to 146 (47 residues), 23.5 bits, see alignment 6.3e-09 amino acids 158 to 209 (52 residues), 33.3 bits, see alignment 5.5e-12 amino acids 276 to 319 (44 residues), 30 bits, see alignment 5.7e-11 amino acids 335 to 379 (45 residues), 29 bits, see alignment 1.2e-10 PF00564: PB1" amino acids 558 to 608 (51 residues), 33.5 bits, see alignment 3.3e-12

Best Hits

KEGG orthology group: None (inferred from 55% identity to cne:CNL05140)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (708 amino acids)

>mRNA_5512 HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631 (Rhodosporidium toruloides IFO0880)
MSRPSQRSRPESVYSASGSSFISPASAVPSTPPTSVGGGDGLAETRKRQSRRDEAIRKKI
ESELARKRPPSKRSGTSGGTSHRAPKPKQGTVSALRPLPALTVPAAMSVADASQLCAAKR
TDCVLVVDENEHLCGIFTAKDLAFRVVGDGLDPRSTPVSAIMTPNPMVTRDTTSATEALQ
TMVTRGFRHLPVCNEDGDVVGLLDITKVFHESLEKLEKAYGSSQRLYSALEGAQEQFGAV
DTGAANPLLAYVQALRDKMSFPDLGSILDARTTAATVGVKTSVREAAKLMREKRTTAVVV
VEGDGKKIAGIFTSKDVVLRVIAAGLDSKTCSVVRVMTPHPDVALPSLSIQDALRKMNDG
HYLNLPVVDEAGALIGIVDVLKLTYATLEQVNSLHVEGGADAAGGPLWGRFFSAAAQAAG
DDDDTESMVSGVNGSEAASSQAPPFQTPTRPGYHRSKDSIDTPGSELYPNDSASVIHDDG
ASDLAPAPRRPGQASSVGGASSQAVPIVDDGTYLFKFVAPGGTTHRFQARYDSHEFLLDI
VSGKLSSDPFFAEQSEDEALPKADPKDFSISYRDDDGDLVLMTADRDVTDAVQTAKQQGK
DRVVLHVSGGQSWKAALAAKEDAAAAAPAVATTKKLVVVEEGDEERIEEEQDVTAEPVKR
KSSKKAAAGDDLVGGVLPKEYLLPASIGFLGVVIAGVFIASRASASSR