Protein Info for mRNA_5515 in Rhodosporidium toruloides IFO0880

Name: 13883
Annotation: K02738 PSMB6 20S proteasome subunit beta 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 PF00227: Proteasome" amino acids 22 to 54 (33 residues), 23.6 bits, see alignment 1.7e-09 amino acids 54 to 180 (127 residues), 72.4 bits, see alignment E=1.8e-24

Best Hits

Predicted SEED Role

"proteasome subunit beta1 (EC 3.4.25.1)" in subsystem Proteasome eukaryotic (EC 3.4.25.1)

Isozymes

Compare fitness of predicted isozymes for: 3.4.25.1

Use Curated BLAST to search for 3.4.25.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (203 amino acids)

>mRNA_5515 K02738 PSMB6 20S proteasome subunit beta 1 (Rhodosporidium toruloides IFO0880)
MQHPSQATTLTPDVSRLKAGEMNLGTSIMAVAFEGGVVVGADSRTTMGSFIANRAVADVV
TAQLSQYEMTHGEKPTVHIAATMLEGIIYQNKDRLSAGIIVAGWDRIAGGTVYNIPLGGG
LFSAPWCIAGSGSTFVWGYCDKTFEPGWNKDQTLEFVRDTLSLAMSRDGSSGGTIRMAII
TEEGVERVFVPGDKLPNYGGDRV