Protein Info for mRNA_5535 in Rhodosporidium toruloides IFO0880

Name: 13903
Annotation: K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1126 transmembrane" amino acids 873 to 894 (22 residues), see Phobius details PF12755: Vac14_Fab1_bd" amino acids 67 to 162 (96 residues), 131.5 bits, see alignment E=2.1e-42 PF11916: Vac14_Fig4_bd" amino acids 723 to 901 (179 residues), 262.1 bits, see alignment E=3.5e-82

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1126 amino acids)

>mRNA_5535 K15305 VAC14, TAX1BP2 vacuole morphology and inheritance protein 14 (Rhodosporidium toruloides IFO0880)
MDSSTRQGLTNTSYDHRKRAALALEPVLRELATNRTQENEQKLRLYIVQLVELAGTRLQS
STATTTNRSGGIMGLASLAIALGPRLADFLGAIIRPVLACFEDHDSKLRYYACESLYNIA
KVAHGEILVYFNELFDALAKLVSDVDPSVKNGAELLDRLLKDIVTEQASTYVSLANYSEE
EDEDYSLMSAREIREKVRQRDGSPSRPAPPSSAPKPPPRAFSLSRFIPLLQERFAVLDPF
TRTFLISWLIVLDSVPELELISYLPEFLGGLLAYLGDPTPEVRNGAEGLLRDMLGETREV
REIEVDRLAAKREKWAREVERKRRRPSEAKTVTVTDTDNGGDDAGAEHGGKGTPTPRSSG
QKGKPGRADDYALADSDDEYEEEVDGSQEWIPGQGVKIDYPAVVEILTETVSFPDEQIQR
TCLDWLSQFLQFVPGVVVPFVPRLIPVILSALAHHVPEIEHVAQNTNDLLYAVVQSLPVD
SPLPPGTSLSPSATQPNLAQPSSYVPDRASAASPPPSSIPFPTTSAATPRPGHDRHKPGS
DAAAHLHHHASATALSTITSATSTLTVSPPSEDSDLAPPPELVDPYEPDGRQFQYGLTVN
ELTLQFLSDSEETRVAALEWLLMLHQKAPRKTLVGDDPSIQARRDRPSAQQGGGRQRDLS
ASSTSSGLSLAVLLKLLSDPSDRVLRSDLVLLAQISSIGDGDGGDDYFSGLMTSLLELFS
TDRKLLETRGSLIIRQLCGSLNAERIYRICAEILEKDEDLEFASIMVQNLNLIMITSPEL
SEFRKRLRTLDSKDGQNLFVTLYRSWSHNAVATFTLCLLAQAYEQASALLQIFAELEMTV
PMLIQIDKLVQLIESPVFTSLRLQLLEPERYPYLLKAMYGLLMLLPQSSAFATLRNRLSA
VSSLGFLQTVPRASVISPSAIRASGGLPSSASAGTGPVSSLARGARPDTATPDPPSIRWN
ELLAHFRQVQKRRAAALSSTAGGSTTAGPAPSGRGPTLASPHSASAGYGTVRGGFDGYEA
SDATSMRGVSGGYGGSSTAGGSRFVGTAAKRGAVPTSSHHPFQASSRSGDTASMASSTLS
GGRRGGPISAAASAVQRALSPTMQGTKSRIGSASNGRGAATGPRRS