Protein Info for mRNA_5547 in Rhodosporidium toruloides IFO0880

Name: 13915
Annotation: K08994 yneE putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 508 transmembrane" amino acids 20 to 48 (29 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details PF01062: Bestrophin" amino acids 4 to 137 (134 residues), 33.3 bits, see alignment E=1.8e-12 amino acids 265 to 399 (135 residues), 63.9 bits, see alignment E=8.5e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (508 amino acids)

>mRNA_5547 K08994 yneE putative membrane protein (Rhodosporidium toruloides IFO0880)
MSILLRKIGQTVFPEIAPAVLAFTLVAVAVTVGCEVSGVLTTMLSFAVSLRTSSALERWN
AGRQAWSTVSLASRNLASMIWIHIGGTTLDAAEQAKIEPGSDADEIEKLKALIEKRTMLN
LIQAFAVAVKHYVRGENGVYYEDLYELVKPLPKYSFPSGIDDPSGIRRDVVTGLWRAPLP
DGSTCIPMPATSGSATLMVGTMSSSALSSHIDLEKGTFGAEELGELRKEPKIRKVQLLPG
HNPPPFSIYDYAPALLVFRPMLRAIVREHRAHKVVASTNIPLEIQLFLHGYITTCIRRGT
LAAPLVGVAFGALNQLGDSLAICERVLSTPLPFSYSVHLRATAFVYLLILPFQIYGSLGW
LTIPAQFIAACVFWGFLELSRQVEQPFGYDDSDLDLDKYCALIAAELQEIAAHSAPSPSS
FTFSPLNTPFGPYDTRSAPEILADFSQTHGGTNQAAVKGVPGMRAFLARSYHDLEERARG
EREARKRSKAGSRRNTGDDGRTVEVCTL