Protein Info for mRNA_5552 in Rhodosporidium toruloides IFO0880

Name: 13920
Annotation: K03360 GRR1 F-box and leucine-rich repeat protein GRR1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 959 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00646: F-box" amino acids 113 to 145 (33 residues), 21.2 bits, see alignment (E = 4.3e-08) PF12937: F-box-like" amino acids 113 to 156 (44 residues), 44.1 bits, see alignment 3.1e-15 PF13516: LRR_6" amino acids 256 to 280 (25 residues), 18.5 bits, see alignment (E = 3.1e-07) amino acids 450 to 474 (25 residues), 9.1 bits, see alignment (E = 0.00033)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (959 amino acids)

>mRNA_5552 K03360 GRR1 F-box and leucine-rich repeat protein GRR1 (Rhodosporidium toruloides IFO0880)
MSNRLAASTAAARGAVPTYLTSDTPPTPSRSPSNASTGGDASGGEGDDSEAESDFPDGDP
DDPDTSSISLAHLGPALATPKPSALTPWPFNAPGGGMTSPTQDSLGPAAIPASSLPHEIL
LHILRLLPSASLAPALRVCKAWCQCGVELLWHKPSFSSLAPLYKMLQVLSLPDKTFPYPD
YIRRLNFQPLAGELTDQVVDKLLPCTNLDRLTLTNCKKLSSPALVALLTKNHRLVALDMT
DVTEVDDHVLQALADNCPKLQGLNLSGCTKITDKGMEALALGCTSMRRIKLRKCDQITDI
PIILLSRNCPLLLEVDLANCTSITGLCVTELFRTSRLLRELSLIGCAHITDDGFPNADEL
QLLKQGSSNSASGYPSPTLGANGDDLYPSSSSRSTSPGPDPLTTSSGTLIPRPAPLTSPP
AYRPFDQLRYLDLTACYGLTDAAIAGIVKYCPKLRNLILGKCHRLTDESLYAICGLGKYL
HHLHLGHVSGITDRAVTAVARACTRMRYVDLAYCGNLTDLSVFELAANLSRLKRIGLVRV
NNITDAAIQSLAHRNSLERIHLSYCDNLTVPAVNEMLQALPRVTHLSLTGVTAFRKQALQ
RFCRSPPKDYNEHQRRSFCVFSGRGVQELRRWLRSLSRHEIALLAQPDPPADEDPLTAAA
RLAGAGGNGPIPPGQTAAQFAAAQANLNAARHNLAIAHHQRQLQAAQQAAANAAIPTQQQ
MQQPLQPGAQVPVWNPYLGGGAAAAGNMLGLNMAAQPQTGGFGAVGGVGGAAASPPQQSQ
AARQDDDDDDAWAGPAYVPGTFPNAPPQQVPIQWIDPPQRAQLQALQQAAQIGGATASTS
AGGLRNSAPPAFGSTSAAPSSSSSASSASNSHDRSEARRARVERIQQRVDSIFGREEDMD
VDDGRPRRPRRDTVTRHNYRTYGAAGAAASDHGRQRREDVEMDDASASEGEEEDISFGE