Protein Info for mRNA_5554 in Rhodosporidium toruloides IFO0880

Name: 13922
Annotation: KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1185 PF02463: SMC_N" amino acids 110 to 1120 (1011 residues), 76.1 bits, see alignment E=2.8e-25 PF13476: AAA_23" amino acids 115 to 338 (224 residues), 35 bits, see alignment E=2.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1185 amino acids)

>mRNA_5554 KOG0979 Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily (Rhodosporidium toruloides IFO0880)
MSDSDEDSPMARVKPERTTSTGKTRRRAVDSDSDDADSTPRPANGDEDHTDSHTAKRVKL
ENGVNGKGKERARVQDSDDSEDEDGEDVKMVLRERKQLVRDDTGYVTGSIVRIACHSFLT
YDEVEFNPGPALNMIIGPNGTGKSTIACAIALGLGFSPKVLGRATKLSQYCKNDSNEETW
IEIELKGHPGKKNLVIRRYLYRDSERTKFMVDGDETPAKEVAEKMEELQVQVGNLCTFLP
QDRVASFAMMTASGLLRETERAAGHEQLSTWHDVLIQEYKTCKVAQEEVDRVSESLKRKQ
TKQAETEKEVHAFQQRERLEQELGEAQVLQRAFEYDVAYENYQRARQEKTVVANEIAELE
ERNRPFKDSKAALKKLVDSSISQQDKLAKKVQLALKDAESKKQQLAKADDERSATADKIR
QIKSDETTRRENIQKCRKEIAKYEPMVENEPAEADTSEIDRQIRDKTNEKNDVAAKIQET
AQEIGNVQYQGQRLKAQEDQMRHDLARLQEAGKVREAACQRFDQDAWRAVDWLRQNQDKF
KGKIYEPARLNLFLKKDFNGRKLDVRDQSLVSMIEGPISMNAFSTFLFEKREDYDLMHNI
LVDAPNSRQPGSGLRINGAEITGNVPFDRIPRPLSDEELHALGFDAWAIDLLDGPEPVLT
WLCTQHNLHRIPVQLDRRRIDIQAVEQGKDIPRYYTREGSNSIKYSTYGARFAQNDQRAA
QPAKILNTSVDESRISGVTKRIEETHEERKRLHGELQRLGRVGNDLRAQADQLTVERDEL
VQERNAMSKARTAWQRAKSKLASLQSSLQRELSKPSATEKREQLAARMRKLMEKRVKLTI
EYEDLLVKAADVQESSIKVHLQTLQAESDHRAMDLMVRERDEELEEKREALERATAAVAA
LLKEGKRHNAAYQEAVAALSDEQKERVKERRESGEETLQTIEDKIVEIESNLNCTIAVSP
LVLDAYNKRKIEINDLKSKLEDAEEKLDESKKVIETTEGRWLPELEHLVGEVSAKFTASF
ETLGLLGEVRLAKDPDYEKWGIEIMVSFRDCKDNSADVELHVLSGHRQSGGERALTTVTY
LLALAELARAPFALVDEINQGMDQRAERNMHKMLVETTCKADVGQYFLLTPKLLPDLVYH
PKMKVLVINVSPWIPETLSLQGILDAKRKLNKRKGLPNGRAIAAH