Protein Info for mRNA_5556 in Rhodosporidium toruloides IFO0880

Name: 13924
Annotation: KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 122 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 99 to 121 (23 residues), see Phobius details PF02656: DUF202" amino acids 24 to 85 (62 residues), 55.6 bits, see alignment E=3e-19

Best Hits

Swiss-Prot: 80% identical to VTC1_YEAST: Vacuolar transporter chaperone 1 (VTC1) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: None (inferred from 82% identity to lbc:LACBIDRAFT_246424)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (122 amino acids)

>mRNA_5556 KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion (Rhodosporidium toruloides IFO0880)
MSSQPLLQRSRDKRIALPVRVEPKVFFANERTFLSWLNFTVVLGGLAVGLLNFGDRVGKI
SAGMFTFVAMAIMIYALVTYHWRANAIRKRGSGPYDDRLGPTVLCLALFAAVVTNFILRF
AA