Protein Info for mRNA_5563 in Rhodosporidium toruloides IFO0880

Name: 13931
Annotation: K10756 RFC3_5 replication factor C subunit 3/5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF03215: Rad17" amino acids 36 to 116 (81 residues), 35.3 bits, see alignment E=3.6e-12 PF13177: DNA_pol3_delta2" amino acids 54 to 196 (143 residues), 45.8 bits, see alignment E=1.8e-15 PF00004: AAA" amino acids 72 to 194 (123 residues), 62.5 bits, see alignment E=1.8e-20 PF08542: Rep_fac_C" amino acids 261 to 346 (86 residues), 78.5 bits, see alignment E=1.3e-25

Best Hits

Swiss-Prot: 59% identical to RFC3_SCHPO: Replication factor C subunit 3 (rfc3) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K10756, replication factor C subunit 3/5 (inferred from 71% identity to cci:CC1G_00877)

Predicted SEED Role

"Replication factor C small subunit" in subsystem DNA replication, archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>mRNA_5563 K10756 RFC3_5 replication factor C subunit 3/5 (Rhodosporidium toruloides IFO0880)
MSVEDAVMSDAANKVDKGKGKAGELGLADLIVSDALPWVEKYRPATLDDVVAHKDIISTI
DQFIAKNRVPHLLFYGPPGTGKTSTILAVARKIYGSGAALRNNCLELNASDDRGIDVVRE
QIKTFASTKMQGGGSAGFKLIVLDEADMMTSQAQSALRRVIEQYTKNVRFCIICNYVNKI
IPAIQSRCTRFRFAPLPQVEVEKRLNHVIKQENVNLTEDGRQALLKLSRGDMRRALNVLQ
ACHAAYDVTGESQVYQCTGNPEPADVEEIMRTMMNDSFETAYQRISSLKAEKGLALQDII
QGIYDFAQTVEFSSATRVYFLDQIAQVEHRLSTGGSEKLQLTALLSATKNAIELTPR