Protein Info for mRNA_5570 in Rhodosporidium toruloides IFO0880
Name: 13938
Annotation: K06067 HDAC1_2 histone deacetylase 1/2
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"NAD-independent protein deacetylase AcuC" in subsystem Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (601 amino acids)
>mRNA_5570 K06067 HDAC1_2 histone deacetylase 1/2 (Rhodosporidium toruloides IFO0880) MSGILTPIAGEAKKRTCYFFDSDIGNYHYGPSHPMKPHRVRMTHSLVMNYGLYKKMEIFR AKPATRKEMAQFHTDEYVDFLARVTPDLVEAAAEGSGGPKVAGLAREMGRFNLGDDCPVF DGLFEYCSISAGGSMEGAARLSRDKCDIAINWAGGLHHAKKAEASGFCYVNDIVLGILEL LRYHPRVLYVDIDVHHGDGVEEAFYTTDRVMTASFHKYGEFFPGTGDLKDIGYGKGRNYS VNVPLRDGITDENYRSVFEPVISQIMEWYRPSAVVLQCGGDSLSGDRLGTLNLSMRGHAN CVQFIKSFGLPLLVLGGGGYTIRNVARTWAFETGLAAGMELGVNIPMNEYYEYFGPTYRL DVPQSNTEDMNTSEYLEKIKAQVFENLRQTGGGSAPSVQSQPIPRTAMDEDDDLEEDERD PNVRRHQAEVDRRIQRDDEFSDSEDEGEGGRRDRQSHRRESPKARSKSPAPAPAADATPA APAIPLETTSASAAAPTDAPVTTTQAPLPANITCGAEEPLAPLKPAGESTSNATEAALAE TAPEAEEKAGAIAEANGDAIGGTVEMPVQGTSAARMTTTAGPGEDDARGEDVEMQEASGS A