Protein Info for mRNA_5571 in Rhodosporidium toruloides IFO0880

Name: 13939
Annotation: K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 871 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 630 to 645 (16 residues), see Phobius details amino acids 669 to 687 (19 residues), see Phobius details PF04003: Utp12" amino acids 607 to 719 (113 residues), 78.5 bits, see alignment E=2.3e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (871 amino acids)

>mRNA_5571 K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5 (Rhodosporidium toruloides IFO0880)
MGKKAPKTAPRTTALAVSVEAVATTLTAFSPSASHYAHLSAAPDAHTLRVFETATGKCIS
RWASNAVGQDEGDEPRVKSIEWCWVPSASAGEADQQGEGKRGKKRRKSDGGGAVDSPAKH
SLASLKPQPPQLTLALGLESGSILLWHPSGTASRTLSHPTSTSPITALATPVSSSVQEDG
QIWSAHQDGSVRVWDLVSGNVVGKVSGLTEEPRWDDLVVRYEPAAEGSKRTVHLVLSHLS
LRVYSLQLGAASRKEGKVRDLKATELGRCTGHVEPCSVRWTGLSSTSASPADFGSDASVD
KLTFLSYSPTDRFVQVWQIATTSPSPNPHIGLLLARLALDSGVASASVSSLLPSTSTQTL
AAIDSATGNVSLTSLALSFTSHAESSTPSKKGKKHGLGVVALDVSCEITTPAAGGKNEAN
VAEVAFREGEEGRALLCRGGVKPVFESVAVKEEGAWLKKVELARSASGLLVGNGVADSAG
APQPTRYSEQASASVAAATSALDAAAGSDDEEVIGNSGELDVDMAEPTLADRLKALKVSQ
KKERKAAARKQRAAQDGADDDVEVASESDDEDFDEEELEDEDEEGAGPAVPATTLTTTLV
QALHSQDGPLLESCLAHSNVNLVRSTVKRLPSGGLVLSLLEAIVERLGKQKKGREGMAAV
KRARALVAWLKETLVVHVGFLVTIPSLVNRLAALHASLTQRLALQPTLLSLHGRLELVMS
QIDLRQDRARAASQRQLAAVSAKPRQGRRYVEGESTDEEGGEEGDSDIEDVVLEAAGDEE
GDETDEDEEDEGESGEFDEDDDDVDSDLEDEEDGADSRKLRSKRNGVESLLDLEAEDDED
FDEDAESLEGEEGDEDLSDDPEAGEDEDFEE