Protein Info for mRNA_5576 in Rhodosporidium toruloides IFO0880

Name: 13944
Annotation: Interpro GDP-fucose protein O-fucosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 598 transmembrane" amino acids 23 to 41 (19 residues), see Phobius details PF10250: O-FucT" amino acids 413 to 566 (154 residues), 31.7 bits, see alignment E=7.2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (598 amino acids)

>mRNA_5576 Interpro GDP-fucose protein O-fucosyltransferase (Rhodosporidium toruloides IFO0880)
MAEYQPLEIDTPVRPPKRRLPSRPIVIGAAVGFVLLILLGSSHEPSRQAVSTGLTKAKEY
GSKLNGWAEDFEASYGPQAKGTMRLEEEYALPSREALRQIVGDDPKYLVKDGWATYGYNN
GRYMLEATLLMAKIAGRIPVIPDSVWARSCATDAEACEEHALRYFEHRNEHEDVVGAKWN
DDGAAYKLGIENFLDIPHLRKTYGSLLTYTEYLHLYSIDPSLYDESLRWNVTNYSPSGLT
TATMSEQEFQDRTFVRVDRPARVRSKEEIMADLPHAAGEGGDVPRLSAETVKLALASKPA
WSLTAARDALRRRGDDKVADKDELFFWQLEEAGAVLLWTYSDEVLMNKAMARPSNEVALP
SSIRPLSTALSSPPYSNASIVYLSGNLHDQRKPGGLYFTSPLSRDSYTRLILSSIRAPPR
IRKLGARLAEKMASLVEGRRWVATHLRRGDFVGIAWAPERDPVRHFERTKAALERGKDVL
RSHFGDDGRLPRNDDPFYLATDESNGTSLSYFRSRGAVLLSDLLTAQDSSLLGPRAYYTD
VLAVVEQQVLARSDYFVGSEMSSTSGGAVNGRLAMGKEEWSWGLLGREKAGRVRRWRA