Protein Info for mRNA_5581 in Rhodosporidium toruloides IFO0880

Name: 13949
Annotation: KOG1198 Zinc-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1359 PF13602: ADH_zinc_N_2" amino acids 1221 to 1343 (123 residues), 35.8 bits, see alignment E=8.1e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1359 amino acids)

>mRNA_5581 KOG1198 Zinc-binding oxidoreductase (Rhodosporidium toruloides IFO0880)
MGPSILQTLLREPTRSYQSIYTDPSTRPSHAASISSSSKRPSSLRSTTSDRSNSSAYTTA
GPAWVNGQWEWSAYGARGGLTGGARSLHTPSVVGKSLGIDRRTTSVRSGDSQVDEAGSVR
SGRSFGSVSVRTSMSAPGGDDAPRRTRKKKKDRYGDGETGSGYNVPARQRSAGDLSTQSR
GSSRFDNLPPIPTSFSSSFDGMRTSRRYSSVSPSYPSSPALSATSSTRVRPSKSRLASPP
SDDTTPSLTSSASSAPSSPPTTPITPHGVLPPLSLDGKPRKTKKRTSTRLGQPGAKGGET
LVVTAQPESHAQRLEEMVQPKDAEENAADPTPAPLAPPVPVPIPGKFYSVDELFALASPS
SPSTTTSSPPPSSARPTLARLETDNASFTTALDSPSPETEQTSVKVPRLKLTRTESEQSR
IGVRGSVELGVQSEEEQEQAMQEHEEEEEHSEEEEEEVPQAQPDGYKDEPVLAHFVNVKR
SPSKRKSKDGSSPSKLRPSVEPEQTYEIVRSSKSKAPRSSSSSTLSSVDPHLRPSSPTHS
DLSASSDLSASSTLASTDVPDWLQRIRALGEPIQPLVSNPSPKSKRQVVPPPHWTVQQLR
AQEGNGGSGSGRPSLGRPRSTKTLSSRANILEAMPEDAEAEAEAAAEDQELQRLQRVKAA
TPAWVKKGAVVADSPTGSVRTASPAPLSRTSSLAPSSAGSSAQGTTRRTRSMDLDRDHLK
ALSPLTRSTSLMSSRPGSSRTSSAKSKGSSRTSSAKSKGSSVGSMEYDLEAIAAAASKPR
GFSKLIQPPLASSLATKQPAVVAVVNQPRTPSPGRPSSLRNVALAPLFPRQVDDDARSTS
AMSDLSIMSAPQLSPMRPPRNPARLSAPPPARPIFPPSAPPSERAKSPTPSFHSAYESPE
AVSPASSIIARPTPRPMSMSFSAIERPTFREPPPPAPPISTAVASPAPSVISRTPSVQPR
PLSSYLPPSTVDLAMTALAISPRADFGKQKSSRRFGLFRRSSNANLASSSSSKHFEPSLD
LVYESIDGRAFRKRLNTEEVLVEAITVGVDRWDRERVWQLAKTGGAAGWVPGRAVYGKVV
EVGSAVSRVKKGDLVWGLSPLKRSGALASLVILPRDNVSLAPTSLPVELAAALPAAATSA
MLIMQSLCNTLPKGSKVLVLNAHQGVGFFCLQLARHYRPGVSGSRDLWMVAQCPLHVLDA
ETVCREAGATDMLRDEPLAALNSIHEGSFDAVIDTIGGRRLYDASRRILHNSGSFITTVG
DELTASSSSSSNDYQTSIRSLRRAFFKKDKKSIAYWKVEVDGTDAPEAVRDTLDKVRQVA
DAGALKPRMGKVLPMSEARRTFEPNEADEDATVVRVKEV