Protein Info for mRNA_5586 in Rhodosporidium toruloides IFO0880

Name: 13954
Annotation: HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF00072: Response_reg" amino acids 213 to 331 (119 residues), 81.7 bits, see alignment E=2.2e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (372 amino acids)

>mRNA_5586 HMMPfam-Response regulator receiver domain-PF00072,HMMPfam-Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase-PF02518,ProSiteProfiles-Response regulatory domain profile.-PS50110,SMART-cheY-homologous receiver domain-SM00448,SUPERFAMILY--SSF52172,SUPERFAMILY--SSF55874 (Rhodosporidium toruloides IFO0880)
MGDGAGAFAPSCSLPAFPTCRSTLRCTQKPSPASTPAPSSVRGRSTCPPPTAPTDVSSGE
GGSTDNVSNESRSATAASRASEVARDTPRVAAVVDEYVEGRGGTGAAVDPARPRGTDRRA
SPFTHTTWGGSGLGLWIARNLCELQAGRIEVASTVGKGSIFRCFITARAVDNPDAYQDHQ
ASFSEGYGGPVGGLKMTVGQRKGEDAPLKGLTILCCEDNQINRTVLRRQLTKEGCEVLLA
CDGQEGLDQLQSRADGTIDCVLMDIEMPVMDGLAATRAIRHAESAGQRRGHQPIIGLTGN
ARSGQRQIALDAGIDVVVTKPYKMPELISQIRSLLSGSSPSASPSRPAVPLLPMHAPAPE
TTGQHPIPTPSA