Protein Info for mRNA_5590 in Rhodosporidium toruloides IFO0880

Name: 13958
Annotation: K11137 TELO2, TEL2 telomere length regulation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1089 transmembrane" amino acids 440 to 456 (17 residues), see Phobius details amino acids 469 to 490 (22 residues), see Phobius details amino acids 886 to 905 (20 residues), see Phobius details amino acids 932 to 953 (22 residues), see Phobius details amino acids 960 to 979 (20 residues), see Phobius details PF10193: Telomere_reg-2" amino acids 662 to 783 (122 residues), 106.2 bits, see alignment E=6.5e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1089 amino acids)

>mRNA_5590 K11137 TELO2, TEL2 telomere length regulation protein (Rhodosporidium toruloides IFO0880)
MPVAATPDTPSGSSLSARLAEPLASTDELLDLLLPPLQSLSLLSDQPSLAQRHARSPFPF
RAERFARRQLGLVQKVLVEKVWPEWEGALEAEEGAAGLVIFERFFVPPPTAFASTSSDAS
SNGATVAISAYNVLSSVLSSKTVSTLPPRSVELALDLLAKLSSAFNVEELYMATVGSSAL
EKNVDGAEPEDEDSFADPAAVARWETTQRVLLGVPTRAANARGVMQGKGKKVMREFPQEL
HLDFFASACARSLADLVWRLADDATLPVSRSALSSILPSLTSGSALDVLLSLAIPQFSPP
ETFPAPADILLRRQRHIDLWRAVADELSERDLQRFMRSVLASITQKLRSRPDGTVLQQAR
AAAFVLDSFFGALNPANKATWKAALAVFFDVRGTPDTDLTPLLAVFWAAGEAARVELLKE
VLKIWGNAEEIQAGLGSRRLYLTSLLLSLVVSLPPLQPDLVTLSRSPAFLSAVSTHLSLV
APLQRLLGMLVAEIVSARTVDPKGELKPLDFGAEIWAGDSPDKSKIRHLRGVLAQVEAAA
AGKVEGWQDVLRQLSSSKATSSQAPAPGPIATAPLKPTSVEEPPVQPAKPKRPMISIIGD
DDSDDDFEPLPLPPGPSEATLEALASDDPALYHSAFPSQQAATAGPAGGASHTRKRGKLR
PPVYIPELVAYLKGEDPQGAKEEADGEAERVEMGLKEGEALVRRKAGWGGELRENAVDLA
FALMGLHNKFELDDFEQHKQAILVALLVACPTEVAPAVIEQYFTNSYSVAQRHVLLAALA
LAARESAGLSTPTSAPKSHIADRDEQFPSKRLPPQLHRRLAGASTNSDGPVEALSADLTR
MALSGAREDAETSLPEAAREKLLKVRGTTRRSARLDVAQDASSTPTFASIAAEIFILPFI
NRFWLYLRDTATSSLAVRRTQSVGPYAGGAPAPMLLEPMLLAKFLATLAVLVHAARHSPA
FLAVIVPETLAFILAIKPAHPSAVVSARAIEEDTGLDTDLVVSSALELVLVALDATVQLD
GGRTLMSASAANGEGGAIVADVKDWAEEVFEREERRGGDVIVGRPGRAAAGVLLRVDEIV
GRWRVAVGW