Protein Info for mRNA_5591 in Rhodosporidium toruloides IFO0880
Name: 13959
Annotation: K11182 AOC1, ABP1 diamine oxidase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00276, primary-amine oxidase [EC: 1.4.3.21] (inferred from 54% identity to cnb:CNBG3680)Predicted SEED Role
"Monoamine oxidase (1.4.3.4)" in subsystem Aromatic Amin Catabolism or Auxin biosynthesis or Glycine and Serine Utilization or Threonine degradation
MetaCyc Pathways
- phenylethylamine degradation I (2/2 steps found)
- salidroside biosynthesis (3/4 steps found)
- L-threonine degradation III (to methylglyoxal) (2/3 steps found)
- phenylethanol biosynthesis (3/5 steps found)
- superpathway of L-threonine metabolism (11/18 steps found)
- superpathway of phenylethylamine degradation (5/11 steps found)
- aromatic biogenic amine degradation (bacteria) (2/8 steps found)
KEGG Metabolic Maps
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Glycine, serine and threonine metabolism
- Phenylalanine metabolism
- Tyrosine metabolism
- beta-Alanine metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.4.3.21
Use Curated BLAST to search for 1.4.3.21
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (795 amino acids)
>mRNA_5591 K11182 AOC1, ABP1 diamine oxidase (Rhodosporidium toruloides IFO0880) MHVAGLLGALLAATAVTAAPSPKLPYFRGTRPRPAIQNFVSNVASAQYNLTDIPGEPTTK APHSNIWATLSNDEAAEVVAFLHNQTALNLTAASDAGSWDNQITVIDLAVPNKTETLKYL SGKGPRPPRMAYATIMFNSVEEPYVEDYLVGPLPVSANTTYHPYSFRTTKGTSKVRNYDA DSDATYEFMVDAAKTCDDVVEDLLGAPTESWDIWGIDPLWHEDGRVISWVGFWGVPESVF DGETLLPQGLYMKFDFTGRDPSGWAFLGWLHDGIFYPTTADFRHAWSNGKVAKTTRNAGM NETWIGTDRDGAELPYDNRPPPIQVAPGGQRFAIDEDAQYVEWMDFSFYWSFRRDSGMRL WDIKYQNQTVLYELGLNEALAHYAGNDPVQSGTAYLDTWYGFGPYAFEAIEGYDCPTYAH YAPTTFFANEVATTHRKSVCFFEDTESFPIQRHANGQYVAATKNVVLKMKSVSTVGNYDY SFVYSFMLDGSIGVEVMASGYIQSAYYAQNGEYGYRIHDGLSGSMHDHVLNWKADFDVLG TKNTFAMHTVEAKEVKYPWSNHTRSTMHLVRDTLKNEENATLHWPANGKSMYLVYNAEEK NKYGEERAWRIMPHIGGAGMHATIQNSSNLGPSLNFAKAPLYVTKHHDSEFSSAHASNAY DPYNPVIDFAKYLDGENLEQEDLVLWFNLGMHHVPHTGDLGNTVHTTAHAGMIMSPHNYL LRDPSRRSSQMIRLNYNSSASDVVSEVLTFGGQQASGLFNLTAIQPDYKAYIGDSNVRKF PYDPQHPYNDTESIV