Protein Info for mRNA_5599 in Rhodosporidium toruloides IFO0880

Name: 13967
Annotation: HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 722 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00339: Arrestin_N" amino acids 335 to 378 (44 residues), 26 bits, see alignment 4.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (722 amino acids)

>mRNA_5599 HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296 (Rhodosporidium toruloides IFO0880)
MGTYMARGRAAGLGAAMRAPAVARRATWRVDWIKRACMVTYAVRVGVSEWPSPVVPRSIK
RTESTPGCCRPLIRAASPDPPAIVLVVGALAYNACARCNSAQIVLAVRPHAQRRREARRD
VRSLDEEEQASLSRSHRLLMAWTGVLWRSSVAAFHAIPGLAIHSRRSISRPHFDSFPRPP
AAVAAFPLVRLQPRKPIRSFDYSSPLSSTSSASIACVVSSRRPTRRASRSSLLLSLALTR
TAHHTHQRRAAMLASLFSSPTVKVTLNQDEIFVHPVDEDYPTQDPVLRGTTLLSLPSRKA
VKRIKVVLEGLCDVQAAGAGNPYETTLVLRKELETDLGEFFDEGNHAFNFAFIIPSTTPV
SQRCIYGRTRYYVKATVEFDGVLSGSVSSPSVAFWVCGNPSPPGELPSTTDLSFQHFSED
LGPVGVGVSSPHLTVAALVNIRLSLLGPVVPVTIVSVNGIITQTFEVSYADGRIARPKPK
AHVLTKVDQKASPSLVVPIHNPATCTEEPGQLDEGAIPAQTNPPVPAPSFRPVSKCCTPH
PDVPVPDPTPLVHLKAGQEFHHARICRVPTDDHVRPSTLDGSRGTKIRVSHVLSVEVRYK
KDGSDEEMVLTMGKPVTITSCCCLVDSLFLPAYSADNATPTITEPIKNHCLCNLTTKSLL
DRDGEQLRRAGAIEKPVTERSLGVGREDKSPAWTSGLGEYGSACFVRQDSGFEESGDVLV
ET