Protein Info for mRNA_5606 in Rhodosporidium toruloides IFO0880

Name: 13974
Annotation: HMMPfam-Glycosyl hydrolase family 61-PF03443

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03443: Glyco_hydro_61" amino acids 22 to 228 (207 residues), 168 bits, see alignment E=1.4e-53

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>mRNA_5606 HMMPfam-Glycosyl hydrolase family 61-PF03443 (Rhodosporidium toruloides IFO0880)
MVAKTAIYLAALAAAAHSVAAHTIVTSVWVNGKDTADAGVGVGSSYMRTPSSNSPVKDLS
SPNMACNDRGTTPVSGFLKVAPGDVIEPEWWHSGARGEDPIATSHVGPLESWISPYDANT
KGDVWVQISSEAYDKDSSQWAVEKMIANKGRNKVVVPKDIAPGKYIVQFNLYGMHEAQSV
GGGQWYPNCAQVEVTGSGSTKLPSGVAIPGFYTGSTPGVVWDIYYSSTYDTKLDYIAPGT
GVWDGSATYSTDVCHEKVYGLAPAGYCQGSNNSTAPVKTSAAATTSKAPATTSKAGSTSA
VASSATTTKVAQTTSKAAYTTPASSPAAPSSAPAGTTTSSAPDSQYTDYNSCMRAYNKCL
DAHQPKNGGAADFSACQSMNCQSYQRMARRSARHAARH