Protein Info for mRNA_5609 in Rhodosporidium toruloides IFO0880

Name: 13977
Annotation: HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 746 PF12799: LRR_4" amino acids 334 to 370 (37 residues), 29 bits, see alignment 5.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (746 amino acids)

>mRNA_5609 HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058 (Rhodosporidium toruloides IFO0880)
MSAPGRALRTPAPIQPRGVPPLFRHPSSSSSSWQSTSTSEASLDSSTEDDELSSDDDEVV
DFETESHWSSSGISGDESVWMRRLDLSIGGRAVAAGGSERGGTGGPTRTNSPVARSNLRL
SLAVLRARQSLFSHSYDSLAGALKSLSSILPPFPSLSRPSTLGATSENQLGIFVPVLARL
AKDVRAAILSEDKGREFRRTKLAKEDAKALVALRQRWIVGTKDDGLTSKGKGKEVESADW
AAFAEDLVAKNPPPDFLSQDPHTALDAALLTSLESFLLPSSLPRISLSNLALDDSILSSW
PSLRRIEEVAAWYFSFTVASAKEAQAKARRALDNVKSLDLSKNRLTTFPFFLTTLFPNLE
TLSLSHNAFPHLPPWVTLFSSLRRLRTHANRLVSSRKALKPLSTSTNGRRRRTTKHAGTR
ANVRDVLIDLRYTIFELRPDRLLPSSTPTSASSLADLSAQLLQSLNLDGPTESGSHSALA
NIPSHLRDLVEASYTCISCSRFIPNESDLHVPPFWERVHHLVPGISIPSRLPPQSARPRS
SSPPLSATPDILDLSDDSLAAERPATLSQRLLLTLLARLDAPTPPSHPRPLAHRRASSST
SLSSIASAIIARRPALADNGPPVLPTLVMGGSGPYGRDYRFCALCASAHLGLDAELKAVA
LERFKTLDPFERRQEGEKSYEEEREELHRLSSWVCMCEVCKEERRMREQSEEDDTKEAAS
KAKVLRWLRRKERLRDSEGAAPYQID