Protein Info for mRNA_5610 in Rhodosporidium toruloides IFO0880

Name: 13978
Annotation: KOG1611 Predicted short chain-type dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 786 transmembrane" amino acids 348 to 370 (23 residues), see Phobius details amino acids 674 to 691 (18 residues), see Phobius details PF08659: KR" amino acids 77 to 225 (149 residues), 35.3 bits, see alignment E=2.8e-12 amino acids 544 to 690 (147 residues), 31.8 bits, see alignment E=3.4e-11 PF00106: adh_short" amino acids 77 to 272 (196 residues), 77.9 bits, see alignment E=1.9e-25 amino acids 544 to 738 (195 residues), 82.6 bits, see alignment E=6.6e-27 PF13561: adh_short_C2" amino acids 82 to 316 (235 residues), 76.8 bits, see alignment E=5.1e-25 amino acids 549 to 781 (233 residues), 77.4 bits, see alignment E=3.3e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (786 amino acids)

>mRNA_5610 KOG1611 Predicted short chain-type dehydrogenase (Rhodosporidium toruloides IFO0880)
MWASTTLSGLRGHALSDESLNATACSLETGARHCVLSDMLLTKSASALPDRSTDALSSSF
TTSRTFPYSMSSPAPTVYVISGASRGIGFAITSILAQHDNVLIFAGARDLKSAQLNELAQ
KSSGKVIPVKLESTSVEDAAALAKVVEEKAGKVDYVLAVAGISQSTDPIAQVSLDDVRRH
FEVNTIGPLVLFQALLPLTTKSTAPHFIVVSTIAGSIASMPQVTFPVSAYAISKTAVNSA
VGRIAIEHPDLDAFVCHPGFVSSDMVKQFAEKTGAPLSDFESFGMITPEESAASLVKLFD
EAKKETHSGKFFNVDGTSVLQSSVNLMRRRHLRIAQPLLPQPAQDFRLLAATTLAATFAS
PSSLCFLILFSPLRASHIQSHVERVEHRSRSEPRSQTSSQSRSLPNGGPLLTDAACRRRA
VSSSAQESRRGLSLRWFAMRGRRVWDDPQAGAVIRSDKSLRLAERHTLAQLSRWETADET
RDASDMLLTKPPLSVVSLTDPYDAFLGDANEVPANPLAVPVQASLFLLHHSRLARTMSSS
APTVYVISGASRGIGFAITSLLAKRDNVLVFAGARDLKSAQLSEFAKKSNGKVIPVKLES
TSVEDAAAVAKVIEEKAGKVDYVLAVAGISDTSDPIAKVPLDDVRRHFEVNAIGPLVLFQ
SLLPLLNKSTAPHFIVLSSVAGSITSMPQFLWPVSGYAISKTAVNALVGRIAVEHPELDA
FVCHPGVVSSDMVKDLLKKTGGSVSDLDGVITPEESAAGLVKLFDEAKKETHSGKFFNVD
GTFLPW