Protein Info for mRNA_5611 in Rhodosporidium toruloides IFO0880

Name: 13979
Annotation: HMMPfam-Protein of unknown function (DUF2433)-PF10360

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 737 PF10360: DUF2433" amino acids 327 to 444 (118 residues), 155 bits, see alignment E=5e-50

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (737 amino acids)

>mRNA_5611 HMMPfam-Protein of unknown function (DUF2433)-PF10360 (Rhodosporidium toruloides IFO0880)
MQPASAVQQPAQQAAAAPSKQVQVDSMTSRVDVINTEAGRILCVADVRGAISTLNTLAAE
HSAVAIIHSGDFGFYEPSSLASISDRTLKHLVQYSSLISPAFRSQLLSPSTSPSQMRELL
ANPPKTAFPNASPSESPAFGLSEFPKLLSGELKLNVPVYTVWGACEDVAILEKIRLAPPS
AQSIPSDPSTLAPAPPSTATRPSFGTLPTTPPSYSITNLTVLDEATTRVLLIGGVRLRLF
GLGGAVVPHKLFDNGTGTATIAGGQGTMWTTVLQIGELVDTAQKVYDPSETRILITHASP
GREGLISQLALVLKADLTISAGLHFRYGVSYNEFSVQYDPDAFRNKLEASHKSFREIWDN
VKGQVESVVDDNQRSLLQNALAVANRIPTSNPPGSGGAAIEETAWKNCWHWNLPDAAYGS
LVLDVREGRIGSEMKSQGFNFAYRQNTPRPAAAASPVPANAAPSSNTRPNLPHAPVATAN
ATPAAAPVPTASAAFSQQRPFGPGANGPIGRPTPLGNHPHQRGPSGPRGGGRGGGGFTVP
GGWGHAGATPVAGSVVAPSPGPVKDDAKAGSAQAKQDEAKPAAPAAAQTPAQPAQQQQQR
QPSGRGPRNGGAPHQPQQQQQQSTTPAPAANAETPASNKADKTDATAVAVASADEAAATE
SSGAEGAPSTPGEGGRGRGRGRGGRGGRGRSNGEWRGRGGRGKSGSMSGAEGGAEGKSPA
PAATPASGGGGGESGSA