Protein Info for mRNA_5613 in Rhodosporidium toruloides IFO0880

Name: 13981
Annotation: K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 PF01399: PCI" amino acids 296 to 417 (122 residues), 60.6 bits, see alignment E=1.9e-20 PF18098: RPN5_C" amino acids 424 to 455 (32 residues), 58.4 bits, see alignment (E = 6.1e-20)

Best Hits

KEGG orthology group: K03035, 26S proteasome regulatory subunit N5 (inferred from 48% identity to dre:321898)

Predicted SEED Role

"proteasome regulatory subunit Rpn5" in subsystem Proteasome eukaryotic

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (465 amino acids)

>mRNA_5613 K03035 PSMD12, RPN5 26S proteasome regulatory subunit N5 (Rhodosporidium toruloides IFO0880)
MSSAEGLARKQEADLTPQCDELIPAAEQLAKEGKLQEALDKLLALEKQARNASDLASTSR
LLIAVIDILFSHSDYAQLNTYLHTLSRKHGQLRQAVQKMVDKAMEFVDKLEGDDKLKLIE
TLREITEGKIYLEVPRARVTRTLASIKESAGDVNAASELMQELQIETFGSMERREKVEFI
LEQMRLLKEQEDWEKMAIVAKKINLKWLAEKDHQDLKLRYFSLMILYSLWVDKYLDVAKH
YRSVADTPSISENPVLAQACLRNIVYFLILAPYDNEQNDFLQRVWKDDKLKESKDLYDLV
KCFIEKQLQRWPNVEALYGGALRQTKVFGSKGTKGVEHDIEEDEKHAKGDKRWKVLQDRI
VEHNIRVVAGYYTRIPLSRLATFVSLSVAETEQFLARLVTSKTVYAKIDRPAGIVTFVKP
KTGDEVLNEWSSDVHKLMGLVEKTCHLIAKEHAVHAALKAQQARA