Protein Info for mRNA_5620 in Rhodosporidium toruloides IFO0880

Name: 13988
Annotation: HMMPfam-GRF zinc finger-PF06839

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF06839: zf-GRF" amino acids 52 to 99 (48 residues), 32.1 bits, see alignment 4.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>mRNA_5620 HMMPfam-GRF zinc finger-PF06839 (Rhodosporidium toruloides IFO0880)
MSTRTFTRGASRGRGRGAIRGGAGSGGAGFRKNDAQKYRDHGCFLSNGEVLCFCNTEPRI
KAIRRVTRKESSPNLGREFWSCGNWVEGEGCGFFLWCDEAAAKGREYKTPPPAGAAPPLT
PSSSPQKRPFPSPTPAKSSPAPPSTQEDTFDDIDFDSLDAEIEDEIEDADPPTPAPSTPA
SGSPAKKPRFESFAGSSQGPVTPTKPAGRHGGAGAGQTARPGGFDAIRADPDSPFHVLQR
SLFGSDAAAPPASSPTTPSSSPTKGADSDSDSFAALSSALSSLPSLLDSAKKDREKDARL
LMAGKRKEESLRKLLDKEKEEREKLRRENEGLKERIRCVGGAPRVADLSTVAGMLTLSGA
FAM