Protein Info for mRNA_5623 in Rhodosporidium toruloides IFO0880

Name: 13991
Annotation: KOG3393 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details PF05255: UPF0220" amino acids 16 to 188 (173 residues), 194.8 bits, see alignment E=3.9e-62

Best Hits

KEGG orthology group: None (inferred from 57% identity to cci:CC1G_07711)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>mRNA_5623 KOG3393 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MPASSSLPMRSGDPRRVFLLRLPKISLGPRKREFLVYFAGALFAFGWWAFLDAAVLSSHA
KPISDPDTPYDPIPVHVTFADWAPGLCATFGMIIVNLIDKARLMSDDWDGSWSGGGAAWK
ARLFLFVGFALMAGGLAGSITVLVIKYVVPHYPESYGINWGVANVLQSITIMFSSVVLWI
AQNAEAEYDYNITL