Protein Info for mRNA_5624 in Rhodosporidium toruloides IFO0880

Name: 13992
Annotation: KOG1611 Predicted short chain-type dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 105 to 117 (13 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details PF00106: adh_short" amino acids 1 to 195 (195 residues), 102.7 bits, see alignment E=2.7e-33 PF08659: KR" amino acids 1 to 168 (168 residues), 33.5 bits, see alignment E=6.2e-12 PF13561: adh_short_C2" amino acids 3 to 228 (226 residues), 102.1 bits, see alignment E=5.5e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>mRNA_5624 KOG1611 Predicted short chain-type dehydrogenase (Rhodosporidium toruloides IFO0880)
ISGATRGIGFALTSLLAQRDDVLIFAGARDPANALPLQELAEKTGKVIPVKLEAANEADA
AALVKLVEQKAGKVDVLVNNAGIAEDFNKPVLATPPASFTKQFTVNALGALVLFQHLHPL
LIKSSSPRFFAITSSAGSTGSIALIPLSLAAYGSSKAALNHLVAHIAREHGEKDNLIATL
VHPGAVATETAKTTLEAAGIPLDPQLLNMTILTPDESAAALVKIFDQAKRETHGGKFLSY
DGTEIPW