Protein Info for mRNA_5637 in Rhodosporidium toruloides IFO0880

Name: 14005
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 transmembrane" amino acids 769 to 784 (16 residues), see Phobius details PF00172: Zn_clus" amino acids 22 to 62 (41 residues), 27 bits, see alignment (E = 3.9e-10) PF04082: Fungal_trans" amino acids 526 to 589 (64 residues), 26.7 bits, see alignment 2.8e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1044 amino acids)

>mRNA_5637 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MENPDSTDKAGKQNARPKRTYRACQPCRARKLKCDLGDPDNPSDPPCRRCRRESRDCVFV
ARANAKTYLEPLPTGSPAPYTTVVPTRPKARKAGSSPDESTSSTPGAAPARALAHPYATP
HVGGWSAPPNRAGHGVASTSTSGAATPSLPSAMSFPPFHHGLPSRSTPPLGYDPMNPHLR
HLAAARTASGTSTPERVAQPVHAASAVATVSDEEGGATDGDEDEDEDMEDLSHSRHDSHE
PGGPSDANVLLSSTLHNPSDALKLLATASSLRSMSAETAFTAPDSRSAGPSGSNTRNASR
SRERRASRSRERAAVVAGAGPGSMTPGSGKGKELERGRPGAPSPLSQTEAGWDRWVPVRE
GMVTVAEAEALLSFFEHHMSPLYPLLSPRIFTPAHLRSLTSRESLLLAAMITISARYSSL
PSGPRARLIHEALAEYCRDELVGILDGSGELRHISSVEALLLLTEWPPITVGRSQKTRER
PRGRKRRSWAHSGSIATVEEVEEQEEDEGVEDAEALLRSSAQYDGMSWSFIGCAVRLAQE
LGIHNIYFGSEKERGPITWEEERCLRTWIYCYNADRHVSVRLGRNAVIQAYMSSSWWEQV
TSHASQGVRREGLSELWAERSLPQGLIAALMGTIQERLYPNKEITRSMLRTGQWESFVRS
LDHELQMMLLKSRTVLQQGNIESTLLQMEFEYVRLYGNAIALRALQERLRRAVKANDLLF
VSPSLLNLQEGQWVLDALAAAQSILDRTVNFLVPKGYLRLAPSRLHQRILFAATFLFKAL
AVGVVEHGQPKVIHLLDQTIAVLHNNAVDRQHIGRGFAALLRRLQEQCKPTLLSRFGVRP
NGQANGENGEGHAPTPAALNQPSPNPEAAALQPPTSADPALAPTPNAGPSLPPSAAATPG
AGVATLPALGLSISPTHASAGQGLLPPGYSSQHPATIPAPASFPPPPLPASSASSHPSWL
APTPAGEQTVEFGGFKLGTAPLGADYSNPFEWDPMNHSIQVGHEQDLLFQSLWGTGAAGL
GASGDFGSGINPALNLFGTLVGDE