Protein Info for mRNA_5641 in Rhodosporidium toruloides IFO0880

Name: 14009
Annotation: K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 TIGR00059: ribosomal protein bL17" amino acids 8 to 118 (111 residues), 105.7 bits, see alignment E=8.6e-35 PF01196: Ribosomal_L17" amino acids 20 to 117 (98 residues), 94.4 bits, see alignment E=3.3e-31

Best Hits

Predicted SEED Role

"LSU ribosomal protein L17p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>mRNA_5641 K02879 RP-L17, MRPL17, rplQ large subunit ribosomal protein L17 (Rhodosporidium toruloides IFO0880)
MRHGKKLAKLSRPTAHRMLMLRNIVSSVLEHEQITTTVAKAKAARKLVDQVIGWGKSGTK
RDYQRAKGFLLTGDRSIKPLFGHLAQRYADRPGGYTRVTLAGNRGGDNAPVAVLELVDNP
NDLRFEFAARAIGRELAIKAQENNDKRVWWDFRERVESKGADKIAELLMAEDTIAPMTRK
NAFKALKFRKGTVPVLEEDVKAAQGEEAVVEAKEGEEAVAEKQGEKVVSPLGPTVVEHPA
TLFLDRTYHHYLTSMATFVLSTSSAPDPSRTVKQLTSRLGSMDIKGPPNPVLTVPRIGRV
PRAGERTTAWDQTLKEGKSSEATGPISIAKGLYNRVARRARWKAALATFEAEKGTTLDGK
SEVQRV