Protein Info for mRNA_5647 in Rhodosporidium toruloides IFO0880

Name: 14015
Annotation: KOG4719 Nuclear pore complex protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1247 transmembrane" amino acids 33 to 57 (25 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1247 amino acids)

>mRNA_5647 KOG4719 Nuclear pore complex protein (Rhodosporidium toruloides IFO0880)
MSSIEQISSSLPFGSSTASSPKSTSLGWRLVLGLWWLARWVPWYLWLMAGIWGYANYGRG
SLAPKRKTRRSVPSTANNAGTPRRPTLTPRQPARPASPFTGINRSSPQLSRRSSYARLPA
SEIRQSSRDGQREMQERRTESRGHTPLARPTVPSPQPAAHSTGSLPRLSSSGLPLPRSTS
SSSLRHQVPASMPVLPSSARKRGRGDDEETEVKRSKLSESYHFDDTDEDGDGPSAMELDD
FAASKPSRGQKRGGPDTDAEEEDGAKRSRTMEPSESEAEEQSESATRKRHAAGSPSASDD
GPERQVSHQGKKARRTARGVGSVRDKRGIEDVSRGESEEDDGYDSEGAARYSRASTRNAD
SDVSEDEGEQASAAEEPQGMKRGSTTVKRFRERARREGSADDDMMGDDLDSASRDAFSPA
PSTDTPQKKRLSTTASAKKRLSSKAASTARKASSARSAVNAKLAAGSRKSSDTPRKIGEE
WTNYEGDRYRIDKDGIQRRLVEVRETRLKYKMPKDSKHPDAKLTHEVVVERWVTAEEYNA
LLEQRKLAWQNSREDEERDRRAAEQAGEDDTSMTDADASPQPASKERGIYFATGVGTPLR
SYSGLGSRLPSSSSLTSLAKLSNSPSSYSTLPNGRMRLPSSASGSALAALAAGSPRRKWS
VNDVKRLLEDEDAAKAEREKRRQATITTGGAEAEAEPSKTAATTTKASTAEMEGKIKLAD
YALPAPATEPAGGEKAQPTTLFTPAPSAAAKTDAQPASIGSSAKGAGVPNFFGAALGSTA
KETQAKPDAVASPASKPAFSFGSVPASTTATEPAPQKTDTASKPSFSFGTAPTAPATAPE
DKADKPAFSFGAAPAAPKPSEAPKPTFNFGAPAAKDTSAESKEETAPPAAAPSLLSGFGA
PSNSASTAPAPTATNEASKTPFSFSSAPTPSTDATSAPSAPAGGFSFGSSTPAAATEKKE
DAAPKPSFSFGSTSTPAPAQPTPAPSFGFGSANTTAPAKTDDKPAAASPFSFGAAPAQAD
KPAAPAFGFGAPTDASKDATNASAPAAASPFSFGNSSTPAPASSSASTGFSFGQPSTSST
TNGAATSAAPSTNPSFGFSNSSSTQPASAPASGGFSFGAPTSSTPSATSTGFSFGAPAAA
SPAPSSTGFSFGAAPATASPAAAPSTGFSFGAAPAAPSSGFSFGAAPAATTPGVSPSTGT
FNFGAAGGPTSPGAQSAGGTPMFSLGSGGGDTATTPRRRPVRRLPGR