Protein Info for mRNA_5674 in Rhodosporidium toruloides IFO0880

Name: 14042
Annotation: K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF00163: Ribosomal_S4" amino acids 4 to 62 (59 residues), 44.4 bits, see alignment E=2.6e-15 PF01479: S4" amino acids 132 to 178 (47 residues), 43.7 bits, see alignment 1.9e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (227 amino acids)

>mRNA_5674 K14560 IMP3 U3 small nucleolar ribonucleoprotein protein IMP3 (Rhodosporidium toruloides IFO0880)
MRQLKHHEQKLLRKVDFLQWKSDAGHREIAVMRRYHVQNREDYHTYNKICGQVRRLSHLL
SRLPPADPFRTKYEDILLSKLYDMGILDRGAKMSDIEGSDAPVVKGFKGKEKEVEGQGKR
EGKVTVGAMCRRRLAVVMVRLKMAETVKMAVTYIEQGHVRVGPDTITDPAFLVTRNMEDF
VTWVDTSKIKRHVQKYNDELDDFDLMGALPTSHERFELPQTSFSFAA