Protein Info for mRNA_5678 in Rhodosporidium toruloides IFO0880

Name: 14046
Annotation: K06005 SAP candidapepsin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00026: Asp" amino acids 162 to 459 (298 residues), 253.2 bits, see alignment E=4.3e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>mRNA_5678 K06005 SAP candidapepsin (Rhodosporidium toruloides IFO0880)
MLVSSPGAVAALVALSSLGQVAASTPHNRLEKRSIHARAASSSVAAKETYAGRKMRSSDT
AAGGIRIPLSKKETISTRKLRKDNGVVDLSNLMNALTFAKDKYTSGCSRIYRQTGKKLPG
FKLKAYEAWAKSALAPLNTLLGIDKRQQDTLTNYQDGSLWGGPIEIGTPPTSFTIDFDTG
SADLWVPGPSVQGYDTFDPSKSSTATPTNQTLVISYGDGSNVIGPVYKDTVSVAGLAAKG
QAFSPVSGMGASFEGTPVDGIMGMAFESLSNIGQKPFFQNLYEQGGVKQNLFSFALGDAN
DGELYLGGVDDSKYSGLVVYTPVIQPGYWMVLGTAYANGVPTALLKNMIIDTGTTLIIGP
RTDVAHFFEKVPHARRFREGYYMYPCAQSWTADFEFGGVKYSVPSEYLNLGLTAEGSRYC
VAAIVGQDIGVDAWIIGDVFLRSVYTVFNFGLNSVGFAPRA