Protein Info for mRNA_5679 in Rhodosporidium toruloides IFO0880

Name: 14047
Annotation: KOG1944 Peroxisomal membrane protein MPV17 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 86 to 108 (23 residues), see Phobius details amino acids 145 to 162 (18 residues), see Phobius details PF04117: Mpv17_PMP22" amino acids 126 to 179 (54 residues), 49.7 bits, see alignment E=1.8e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>mRNA_5679 KOG1944 Peroxisomal membrane protein MPV17 and related proteins (Rhodosporidium toruloides IFO0880)
MAFIFRGYLRLLQRWTLPTQMATASVTAGTGDLIWQKGFEKKEWSEVEFYKTRRLMMYGG
LIFAPIANRWHWVLSNINLRHKVATVLARTATDLTFFSPFATCLFYVSQGAMEGRPFRTE
ATDPSTEGIYERLEDRLFPTVLKQWAVFGPANLINLSIVPLYARPPFMNFVSIGWNTFLA
SAQNRGGIPPPNHVLSRDMQISVAAAEVME