Protein Info for mRNA_5683 in Rhodosporidium toruloides IFO0880

Name: 14051
Annotation: K15505 RAD5 DNA repair protein RAD5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1221 PF08797: HIRAN" amino acids 89 to 196 (108 residues), 47.8 bits, see alignment E=2.3e-16 PF00176: SNF2_N" amino acids 330 to 777 (448 residues), 237.2 bits, see alignment E=4.5e-74 PF00271: Helicase_C" amino acids 1050 to 1164 (115 residues), 54.3 bits, see alignment E=3.4e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1221 amino acids)

>mRNA_5683 K15505 RAD5 DNA repair protein RAD5 (Rhodosporidium toruloides IFO0880)
MADTALFRASSDSEPDEPPKKKARFFADDDSDDDVSGKVDTVHIVSDDEERAPVAGPSRL
VKDEAGEDAPQARNAGRKRETDWDARYFGEVFVSGFALASSSAFVKLRPGEAITLNRSKP
SNPSNATAKKSSASKKKLKHDVVGFRNEKGIEVGRIVREDAAWLAKLLDHDLLRVTGYCV
ACPEKFRSGDDMQLSLSISLARNAFVDPNTSAPEPISQLTNTAGKKGFLDDLKETDREKL
LRERKKALNTLFDKADLHPYIEDGNMPTGTQSKRAMLDKMEKRTGVGDEEEEDELNEIQL
NLVYSKAIKNDASLPERDPPDTFALTLRPYQKQALRWMAAMETGEEQARKSLSMHPLWEK
YLFPGSKDEKDCFYYNPYSGELSLVFPKASTKCRGGILADEMGLGKTIMVASLIHTNTAW
TAAQTTDDETGSAAAGADSDSDLDLSTTKKPIQTQSRLAGGGIFRKSQPSSSTANGSSSK
RPRLKSGTPRATLVVAPMTLISQWCDELERSSKGGELRVLMYYGNKRESGADLQQEIDGG
VDVVVTSYGTLCSDFKQSGFDSPAQPSKEKAADDAAKKSKGKGKVKEEKPKSKKKKPKGL
FAIDWFRIVLDEAHLIKSRTTLNAKASYALKGARRWALTGTPIVNRLEDLYSLLHFIQLE
PWGNFSFFKTFVTVPFQNKDPRAIEVIQVILESILLRREKKMRDKDGNPIVALPEKKLDV
VHLEFTKDERDIYDALYRNAKSKFLGYAEEGTVLQHVTAIFSILMRLRQAVLHPSLVLKR
LKENLRAKGLNRTAIDDDPIAQAGELEETAIQRLIERYTAGLASQGVAEGTQDAIDELLE
VKDEGAADEAGMECMLCMEPVEVPVWLPGCGHSGCKGCVLQHFVDCQDAGEGARCPVCGS
GPLSEREIADLQKADGTKPTASRKKTKKHGYCIQTVASSPGSSTSKEVLILDSDDEDDKP
PSPEKTAKGQGKAPVASITLDSDSSEEEQDDEEDASDDYLPSPPPRNGTAADDDDDNEVG
RLEDSDDDEDGPGDKKAVMLSKGDFRSSTKLDALVNSLKAAKAKDAGLKAVVFSQFTGFL
DLIERVMNRDNFNYLRLDGAMSQSVRQKVVRKFTKTDKSVILLASLKAGGVGLNLIAADH
VYLMDTWWNAAIENQAVDRIHRFGQTRQVYVTRFLVNHSIDDKMIALQERKTKVIQGALG
QNKDKNKKQLAEDLAMIFADD