Protein Info for mRNA_5685 in Rhodosporidium toruloides IFO0880

Name: 14053
Annotation: HMMPfam-Complex 1 protein (LYR family)-PF05347

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF05347: Complex1_LYR" amino acids 9 to 60 (52 residues), 31.3 bits, see alignment 8.9e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>mRNA_5685 HMMPfam-Complex 1 protein (LYR family)-PF05347 (Rhodosporidium toruloides IFO0880)
MAMLVGKGLYRALLREAKLLPDIRLSEHYTAKVRTAFREEQDPESSERALRRIKRAQKLL
RHLQAANEGYLHSITRVYETAYGVRGKVKHAILEPFLEPGRKKSTFPPALAALVTSSFAH
TSRAPTPADLLKPPLLPERADPTSEQARLLGPLTPERIKAIKRRFWNMQTGKIHAPVSIK
VLQGKDEVHDMYEASRLLRKHAGLKIDPEHLMKGWKRTRDLETKSSSSMPKLPPRRLQTA
EQRQNRPPPLPSVSTRRILPDDARRSLGPAFDTTKWKRPRVIRPRLLRRRVQVMMQKMPT
LTVRIPVEEPGEAVLTAETKKPKRKEATFTVQLLDKAAGEKGRYRDMTEEERWWLEKETV
PPLKVKEKGGKK