Protein Info for mRNA_5686 in Rhodosporidium toruloides IFO0880

Name: 14054
Annotation: K05294 PGAP1 glycosylphosphatidylinositol deacylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1155 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 24 to 41 (18 residues), see Phobius details amino acids 739 to 762 (24 residues), see Phobius details amino acids 791 to 812 (22 residues), see Phobius details amino acids 854 to 883 (30 residues), see Phobius details amino acids 909 to 949 (41 residues), see Phobius details amino acids 983 to 1006 (24 residues), see Phobius details amino acids 1012 to 1033 (22 residues), see Phobius details amino acids 1051 to 1071 (21 residues), see Phobius details amino acids 1077 to 1097 (21 residues), see Phobius details PF07819: PGAP1" amino acids 122 to 391 (270 residues), 259.5 bits, see alignment E=4.8e-81 PF12697: Abhydrolase_6" amino acids 127 to 315 (189 residues), 30.9 bits, see alignment E=6.3e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1155 amino acids)

>mRNA_5686 K05294 PGAP1 glycosylphosphatidylinositol deacylase (Rhodosporidium toruloides IFO0880)
MARSRPPTTSAASQHRTAFPRLSTFLVGLSLASLAVCLAIYRSYVATQPHYPPGSLPEDA
RGGGAGSCRMSFMSPAYMHLSGFGREFTRLGNGPWGLYLYREAGWDDNPFVEDGRGGQKL
QFSGTPVLFVPGNAGSFRQVRSLASAASRAWFEVPGVPRKGVGTREGGASLDFFTLDFND
DFSAFHGQTLLDQAEYTADCIRYILSLYAHHEDEATGRNRRPDPTAVIVVGHSMGGVVAR
AAFLNPNYQSHSISTLITFATPHVVPPVTVDAGVNRVYEAINSYWRDAYELSMSPTSSFS
AVDPPSPALANFRAPPHEELRDLVLVSIAGGLSDVTIASESVSLASVLPADGSNGFTVFT
TAIPGVQTPIDHLAILWCQQLMQTVAQGLLAIVDIRRAAGVSSREERVAELGRRWLGSLE
LPPKEDSSARRIALDAVVRGQSSTQLKVGERLVVRPDDVVTGRRTYILPVPPTRTYTGPR
VFSLLTSASIGRRKDDLVEVWACEASGSTRPQPDNDEGRSTLDETEASSCIALYPRHVTT
LPSSPHSSVSPILPAQVEHGSISLVSLDAQQLEGKEAIAVVLKESGSPWVLAEFADAEKS
VHVVEKGALHLLLNGYKLEALPATPAMMSEVWLPALDTSLLTLKLRVYRSECQEHTSLFA
PLVRQYSSIVHESKYFPNVRLASLYTHSSGPYLPPASSPFSASGTRLQFFLDPTCARPAG
PGEKADLALEISVDVWATLGALVVRYRIAMVTVPFAFAMLVLGRQIREYNGGAPFPTFGA
ALSTFSRRTFPLLLTGLLVLSYIQSIALSGHMASRDHLASVEPAHHRHSHLSLPPSWLAN
LMLGNSGSFWAPLMPLLAFAILSVVVVEYVALSGIVGGVAWSIRQLQARGPARLRPFVTL
ADTPDTLPLQRVLTMIVLLLLVLFFAPYQFAYLVIVLVHLFSTIRCLVLAQEAAPASTSS
APAGPSSAVTAAAARRLWDRYHYAFSILFVLVTLLPINALILVVWVRNLAVGWLAPFSSD
HNVLMVVGFLANVEALHSGKMLQRSAGGRYSPTITLFAFLVPAAYSLLYGIRAAHRLYSL
ANLCFLWLALGTSDAFVGSTGATPTAGDAGLVDGPPRDVKRRCSSPPEPTDDLVGEGGVA
RKVATLGTAGGPSRR