Protein Info for mRNA_5694 in Rhodosporidium toruloides IFO0880

Name: 14062
Annotation: HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 178 to 195 (18 residues), see Phobius details PF13883: Pyrid_oxidase_2" amino acids 26 to 197 (172 residues), 82.6 bits, see alignment E=1.8e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>mRNA_5694 HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF13883,SUPERFAMILY--SSF50475 (Rhodosporidium toruloides IFO0880)
MGRMTRWTALASLALAAIAPATARETLDEAAVHARELIAYRARNTGTLMSVFPDDAQVPT
PGLPFGLQEYYAHYPESNGDLLLLAMPIAAIYRNALPPNAPNLTMTINDMYGFGNGNLAA
GRMRVALFGTLERVEGEKENEKCKQAYLEAHPDARGWIPPGGPHAAFYARFRVNKVYAFN
GFGDVAFIGWVPLDLYRSSRAKMRSAKEVHRDWPVPRQPEENDEFSVVDLFGEQGGDHGV
VRILPVSQKEVEVEEKRRERFRVQLS