Protein Info for mRNA_5700 in Rhodosporidium toruloides IFO0880

Name: 14068
Annotation: KOG0143 Iron/ascorbate family oxidoreductases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 PF14226: DIOX_N" amino acids 126 to 244 (119 residues), 107.4 bits, see alignment E=8.2e-35 PF03171: 2OG-FeII_Oxy" amino acids 295 to 392 (98 residues), 74.7 bits, see alignment E=7.2e-25

Best Hits

Predicted SEED Role

"2-Oxobutyrate oxidase, putative" in subsystem Methionine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (433 amino acids)

>mRNA_5700 KOG0143 Iron/ascorbate family oxidoreductases (Rhodosporidium toruloides IFO0880)
MPLRAGGRLPRPPALPARSPSLLDHRSTLNSSSQSAQLVSIASAGGSAAATTPDHGRARR
AIDPLPPLPRESSPAWAFCSFPPSLRPLASAPSPSQSPALAMAAITTGLGSRLVSTDTQA
KAFQELPVISLARLASTDPKERKALAAEIQDAAINSGFFYISDHGVPQSVIDGIFEQAKE
FFALPAEKKMQMDMHNSPAFKGYQPLKGENVDPANRGDVHEAWDMGDDSQVMREGKKNGN
QWPSKTDLPEFQPKLQRAWDEIMALGKRLFPLFALALDLPEDYFADKLKSPGSTMRILHY
PPQFGPMDSKEIGIGAHSDYECFTLLLQHGDVQALQVLNGAGEWVEAPPKPGTFVLNIGD
QLQLLSNSIFKSTIHRAINRSGVERMSSPFFFGLDYDAVLEVLPSCVTEERPALYEPIKA
GEYVEKRLAETYV