Protein Info for mRNA_5703 in Rhodosporidium toruloides IFO0880

Name: 14071
Annotation: KOG1289 Amino acid transporters

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 190 to 212 (23 residues), see Phobius details amino acids 239 to 256 (18 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details amino acids 329 to 354 (26 residues), see Phobius details amino acids 380 to 398 (19 residues), see Phobius details amino acids 404 to 427 (24 residues), see Phobius details amino acids 441 to 462 (22 residues), see Phobius details amino acids 474 to 495 (22 residues), see Phobius details PF13520: AA_permease_2" amino acids 33 to 483 (451 residues), 157.2 bits, see alignment E=6.4e-50 PF00324: AA_permease" amino acids 54 to 488 (435 residues), 90 bits, see alignment E=1.4e-29

Best Hits

Swiss-Prot: 45% identical to YCT3_SCHPO: Uncharacterized amino-acid permease C794.03 (SPCC794.03) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 52% identity to nfi:NFIA_039300)

Predicted SEED Role

"Translation initiation factor 2" in subsystem NusA-TFII Cluster or Translation initiation factors eukaryotic and archaeal or Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_5703 KOG1289 Amino acid transporters (Rhodosporidium toruloides IFO0880)
MSSDKDSIDTYGDEEQLASFGYKQILHRTWHQFEAFMAGFGSLYVVGGARLLYSYGLYNG
GPVALWTSMLVTIVFMTITAASLSEICSSIPLSGSIYVWAAEAGGRKYGRFFGFIVAYWS
STAWTSFVASNTQGTTNFMLTELAVFNAYFPGGGLDSSNVKFRAVQWIVSEAFLLIAILS
NLLSPRRFAWIFKASALIIAVDFLLTVIWLPVGVSKTYGFQSAKWVFTEYYNGSGAPDVW
NFMLVYLSTSGVLTGFDASGHIAEETKNASVASARGMFWSCVVSGLLAFPLLILFLFCSP
SLDTLFTIATPQPFVIIYQLALGKGGQMVMTLVAIFGLLINTSLAVTAASRLIFAIARDG
ILPGSSWIGKVDKNGQPKNAIIFIGVVAALLLCTILPSSVAFTSLISCGALPTIAAYALI
PTLRLIFTRHEFANAKWSTGRLAIPFCIIAAIWNTFLMAVLLSPLEFPVTAENFNFACAV
FTFVTLAGAVSWWVVPEENWLSRRAVGRILDSTEGARARPHPADRVQGGSAAASTVGEQA
KKENEVEQAAAAR