Protein Info for mRNA_5711 in Rhodosporidium toruloides IFO0880

Name: 14079
Annotation: KOG4654 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 transmembrane" amino acids 519 to 537 (19 residues), see Phobius details amino acids 573 to 592 (20 residues), see Phobius details amino acids 604 to 619 (16 residues), see Phobius details PF08427: DUF1741" amino acids 523 to 801 (279 residues), 186.9 bits, see alignment E=2.5e-59

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (816 amino acids)

>mRNA_5711 KOG4654 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MAPALGESPLKQVNKAGQPKRSKLQASWDDLATNPQLFTTDNSPLPTRYFSEFYCLRPNR
TVQDAALAGISDEDLLGKYRTNISELFIGGIKVLKDAPPADVTRSNAVETLILFLRHISA
RNFSNQEQDVMTVLAGSAERHDQVFSDMVSALDATLRNVKVPVSVRHRTLQLALTLVASA
NQSPLTSYFLRRDLFSTLVAFVADDSTKQFAFESALLLGLLANYRKSEARNSYVVRIQDF
VEEGVMERIIDVVSTVCSRARDSYVSISDDTPPSLVASLSSFVKSLRITEFFTGGFYLPP
PPLPTPLAGQTEQQNGGATDDVKGKGKEKQVAEEKPEDEEVSKDEPAPSNGSSDASASTS
SPVSPSPRKPPPPTISLPASPTSPTSCRPPLSSRSSSISLKLRPEDAPFATMPPEMVVVL
LAFYELLNSNKTFCSLVFGEREDGAPPSLPTELISLTSYIVSHAPVTTHRAGLYSRLCLI
ILLILVEEGEGKLSVPREGGEEIRVCRQRQPMLPARDPARAIPLSAMIDTVVIFLRHGLK
KRLDVDTYTIALRLLQRIFQQLKTEKLRIARDWVVVWRAMLSLASFIVTHSLELRQNSVK
LDTLISQLFITLSYAAYWGEQILPNSAAQARLHYELLHADETLDALSDLLGISSVATPAV
TPPGSSNGSVLPPLNRRDTPTRSTFFTLSQFSPTKSSFRSSSSLGVGTGGTGTGDGFVAT
ECIANLRSSITFFSNHINALRLTKGAEDELEPDEILGVIERNLGGVELIESAAMGDLGRF
AGEEVAGGFFEELVGVACEDTLRLLDAEQVAVPSSP