Protein Info for mRNA_5712 in Rhodosporidium toruloides IFO0880

Name: 14080
Annotation: K03253 EIF3B translation initiation factor 3 subunit B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 742 PF08662: eIF2A" amino acids 402 to 631 (230 residues), 112.1 bits, see alignment E=1.7e-36

Best Hits

Predicted SEED Role

"Eukaryotic translation initiation factor 3 90 kDa subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (742 amino acids)

>mRNA_5712 K03253 EIF3B translation initiation factor 3 subunit B (Rhodosporidium toruloides IFO0880)
MQADHADTDAIDYSDLEAKYATEYVSPLDSVVILDGAPIVGQDKVDRLLKAVAKAAAKEA
GVSVSTEQIEMPLDEQGQSKGFMFVSLDNPTEAQAFQRALHGHAFDKRHTFSVVPFTDVD
SYANLDEEFQEPSKEDWAPREHFRAWLADPAGRDQMILYVGDDLRVSWTGKTGVADVAHQ
RNKWTDLFTQWSPQGTYLATIHLQGVALWGGASFERINRFAHPEVKLIDFSPYERYLVTW
SPRPIEPSNSPLSPFTDEDAGNNVAVWDVVTGQLVRTFPMVGVSSDPANELNKRITWPMF
KWSPDEKYAARVTPGQQISVYETPSLGMLGKKSIKIEGVVDFEWAPMNDREREALEAERN
GSAKPGSFVRENKIAFWMPEVMNQPARVSLMNLPSRAIIRSKNLFNVHDCKLHWQSNGDF
LCVKVDRHTKTGKTKYCNLELFRLREKDVPVQVIEIKDTVIAFAWEPAGQRFALITSNDP
SLANPIVGQLPKTTVQFYGFDQRKGDFLLLRTFDAKNAAEQKYLNNVYWSPKGRHCLIAT
LGSTTKFDIDFYDMDLDRDESSKAPEKDAGEASRLITSVEQYGLTDVEWDPSGRYVATYG
SMWMSSMEPGYSIWDFKGVKLEETKIDRFKQLLWRPRPPTLLSREQQKQIRKNLRDYSRQ
FEEQDQLELANENSELVERRTRLLDEWNAWRRECQEMLERRRKELGKPPKASLVKAEEAA
EADEEVEEWQEEVIEEKVEVVA