Protein Info for mRNA_5735 in Rhodosporidium toruloides IFO0880

Name: 14103
Annotation: K12828 SF3B1, SAP155 splicing factor 3B subunit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1217 transmembrane" amino acids 542 to 562 (21 residues), see Phobius details amino acids 575 to 594 (20 residues), see Phobius details amino acids 614 to 632 (19 residues), see Phobius details amino acids 653 to 668 (16 residues), see Phobius details PF08920: SF3b1" amino acids 224 to 352 (129 residues), 111.2 bits, see alignment E=1.4e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1217 amino acids)

>mRNA_5735 K12828 SF3B1, SAP155 splicing factor 3B subunit 1 (Rhodosporidium toruloides IFO0880)
MSDDSTQDEILAAQAARREARLGATANQPDAGLSTEVAAPETAKKSRFSKYNQELDVGTS
ADADMDDEGGSNEVSLLDSFTAPKHLLNEFADEDAEDPFAATAKTRQVAARQSEYHQRRF
DRDAGEEGESYGDKMRRAEIEREEQRVMREIERRQQEGTDEKGEPLKQIEAIDQTPRRRR
WDVAEPEQQRDVQMADASALGKERGGEWDEAKLKGKEAAPAETPRRKRSRWDETPAGPAG
APGETPKRSRWDQTPVGGAAATPVPGSLQPFGIPTTINTVQQGTAGEGFLLVGGVMDRRV
RWLTDEELDAMLPSEGYEIVEPPAGYQPIRTPSRKLQETPLADNGGFMMPEQGISAEALG
ISTELPTDVEGVGDLQFFKKEDAQYFAKILTNEDESALSVEELKERKIMRLLLKIKNGTP
PMRKSALRQITDKAREFGAGPLFDKILPLLMERTLEDQERHLLVKVIDRVLYKLDDLVRP
YVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLAHMISTMRPDIDHADEYVRNTTA
RAFSVVASALGIPSLLPFLKAVCRSKKSWQARHTGIKIIQQIAIMMGCAVLPHLKNLVEA
VAHGLEDEQQKVRTMTALCLAALAEAAAPYGIESFDSVLKPLWTGIRKHRGKGLAAFLKA
IGFIIPLMDPEYANYYTREVMVILIREFQSPDEEMKKIVLKVVKQCSATDGVQPQYVREE
ILPEFFKNFLVRRMALDRRNYRQVVETTVELANKAGVTEIVGRIVNDLKDESEPYRKMVM
EIITKVVANLGTADIDERLEVQLLDGIIYAFQEQTVEDNVMLEGFGTVVSALGIRVKPYL
TQIVSTILWRLNNKSAKVRQQAADLTSRLALVIKQCEEDTLLSKLGVVLFEQLGEEYPDT
LGSIISAIAAIANVVGMTQMSPPVKDLLPRMTPILRNRHEKVQEASINLIGRIADRGAEF
VSAREWMRICFELLDLLKAHKKAIRRAAVNSFGYIAKAIGPQDVLSVLLTNLKVQDRQSR
VCSTVAIAIVAETCGPFTCIPAILNEYRTPELNVRNGCLKAMSFLFEYIGEMGKDYIHSV
LTCLEDALTDRDQVHRQTAASIVKHLALGTAGLGNEDAHLHLLNLVWPNVFETSPHVIGA
MLDAIEAMRVALGPGVVLAHVLQGLFHPARRVREVYWHIMNTLYMGSQDALVAFYPTLDG
LSDERNSYERDNLLMWI