Protein Info for mRNA_5744 in Rhodosporidium toruloides IFO0880

Name: 14112
Annotation: KOG0250 DNA repair protein RAD18 (SMC family protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1135 PF02463: SMC_N" amino acids 100 to 1106 (1007 residues), 97.1 bits, see alignment E=1.7e-31 PF13175: AAA_15" amino acids 100 to 477 (378 residues), 42.2 bits, see alignment E=1.4e-14 PF13476: AAA_23" amino acids 103 to 305 (203 residues), 44.7 bits, see alignment E=3.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1135 amino acids)

>mRNA_5744 KOG0250 DNA repair protein RAD18 (SMC family protein) (Rhodosporidium toruloides IFO0880)
MVDKHIRPDTDSDGDESDSASPSKRARFDDDDADEDQESGNASPLPRSTPPRDRNAQDED
DDESEDDAMSDDEDEQRQALDEVRQTQREGPSRIAEAGVIKQVTLQNFMCHAHTTVDFGP
QVNFLVGVNGSGKSAVLTGITMALGGNAKTTNRGQKGGDLIMEGKPSARVSVTLANKGED
AFLPHIYGSEITVERVLNKSGSGSYKIKNAEGKVVDGKKSTLDAILDNFNIQVDNPMTVL
TQDQSRQFLASASPKDKYTFFLRGTQLAQLTEEYEQIRANTEQMEAALQRKKEVLPELKD
AYRRAKERAKEAQAAIEQQGNLQVLKDQLAWSYVKEVEDRIEFGEEKIAEEQARLLGMEE
ELKKYQEDLALRENNIADLSSAEQEARNEIAEKQPRLDELKELLKADKDRATKWKAFERQ
INATVSRLAETIADFDRQIAEEEKKLSRDLEAERRPLRENIARANEEIEKLSVQMVQARQ
ESTELSEKSDQVSPEYDNVKAQIETAQQRDREVFGRIDHTKRTQQNTMLAYGPRIPEVLN
AINQEGGWREKPIGPIGRHVKLERPEYARVLESFFGPALNAFIVTNHEDAAKMRRIRDYF
KLDHNVPIITQRYDNSFDFSQGEPDSSIHTVLRACKIDHPLVLQVLIVSSRIERSALVPT
RPDGDNLMRTNPRNVEAAYSSDCFQLRNNQGRSSSSVMAPWKGAPRLVSDVSGQIARLNE
ERATIQQDIQRLEQKKAELHQQLASYHRQKQEADSKFAAAQKRTLSLNRSIQQWDAQLTE
EQPNNIAALQENKRETEVERENALAQYKAGLEAHNANKGDMGAIADEKADLENFIKGREK
LLSRMTNQTERVHSEISGLKSRIALVDKAKTASEKRIEHFNEELEATKQMRQERYDMAIE
ICPRPEVAKPKDAKKLQKEIDQIERALKERERRQGASIEQILEELEKRKQVAQEAVKSTN
EIATLIKALSAAYDNRVARWTSFRSHIAQRAKNQFQYHLEKRGFAGKLKFDHDKCRLNIV
VQTEDAQEGQQKAKQKDTKSLSGGEKSFSTICFLLTMWEAVGCPLRCLDEFDVFMDAVNR
RIAMRMMIDTAKMADQTQFILITPQEMSSITWGPEVKVNKLEDPKRSQGALAHGR