Protein Info for mRNA_5749 in Rhodosporidium toruloides IFO0880

Name: 14117
Annotation: K14863 YTM1, WDR12 ribosome biogenesis protein YTM1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 PF08154: NLE" amino acids 27 to 88 (62 residues), 66.3 bits, see alignment E=2.9e-22 PF00400: WD40" amino acids 156 to 195 (40 residues), 16 bits, see alignment 1.8e-06 amino acids 292 to 330 (39 residues), 14.4 bits, see alignment 5.8e-06 amino acids 382 to 417 (36 residues), 29.6 bits, see alignment 9.3e-11

Best Hits

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>mRNA_5749 K14863 YTM1, WDR12 ribosome biogenesis protein YTM1 (Rhodosporidium toruloides IFO0880)
MSVTADLGQPVASTSTATLNGGEEKQIAIRLSTKDPNYQIPPAKFLVPASWRRFHLSELI
NKVLENESPVPFDFLIDQTLLRSSLGAYCAATGTSEEVVLEVEFLPSTLPPQLESTQPSE
DWVSDVSTAVRGAVLTASYAGTLSLQSSDLPPPSTLTFTGHDLSALSATYVPHPLGSEDK
RWVASGGMDRVGRVWEYTIPPPSLTAPAELTPPKTLYTLSLHQAPIASVRSRPLLSSSTT
ATPAPHLLTAGWDGLVGLWDLTPGVNEGDVELEGGERKKKRRKQSGAVVNKSPMAVLRGH
TGKVSRAVFDRSDVTKAYSAGWDHSVRSWDLTIGAETSSKTSDKVLLAMAQLTSPNLLAT
GSTDRLICLWDLRTDATQNISLTLAGHTAPVSSVAAHPTSPLLFASGSYDSTVRIWDARS
AKQALFTLPVPKKEGDEDRKEPEKVLAIDWDGARLVAGGEGSRVITWRVSGQESSAPAAQ