Protein Info for mRNA_5753 in Rhodosporidium toruloides IFO0880

Name: 14121
Annotation: K17267 COPG coatomer subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 910 PF01602: Adaptin_N" amino acids 20 to 556 (537 residues), 372.2 bits, see alignment E=8.6e-115 PF13646: HEAT_2" amino acids 454 to 551 (98 residues), 37.5 bits, see alignment E=5.4e-13 PF08752: COP-gamma_platf" amino acids 646 to 793 (148 residues), 189 bits, see alignment E=1.2e-59 PF16381: Coatomer_g_Cpla" amino acids 796 to 909 (114 residues), 116 bits, see alignment E=2.1e-37

Best Hits

KEGG orthology group: None (inferred from 65% identity to cne:CND03940)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (910 amino acids)

>mRNA_5753 K17267 COPG coatomer subunit gamma (Rhodosporidium toruloides IFO0880)
MSGYKKDEESGVGSFFQDKTTVIQEARVFNETPISPRKCRILLTKIVYLLYVGETFGTQE
ATTLFFGVTKLFQHKDSALRQMVYLVIKELSGIAEDVIMVTSSIMKDMQPNLEVIYRPNA
IRALCRVIDGSMIVGLERFFKAAIVDRNVSIASAALVSSYHLQPIARDVIKRWANEASEA
VQNKSSSFATYGGQGYAAGPTSSIIQYHALGLLYLIRQGDRMAVTKMIQQLAGVKGSGGT
LRNPYAICMVIRYAAKVMEEDPNVQRAMYELIDGYLKHKSDMVNLEAARAICEMKNVSAA
ELHRPISVLQLFLSSPKAALKFSAIRTLAKLAQTHPSAVAAVNLDMEKLINDDNRSVATF
AITTLLKTGNEASVDRLMKQISAFMSEISDEFKVIVVNAIRALCLKFPAKQSVMLTFLSG
VLRDEGGYDFKRAVVEAIFDMIKFIADSKEAALAQLCEFIEDCEFTKLSVRILHLLGVEG
PKSPQPSKYIRYIYNRVILENAIVRAAAVSSLAKFGINVADNAVKRSIKVLLTRCLDDVD
DEVRDRAAFNLKLMQDEPLANTFVRDDSTFSLDTLEARLTSYMADSSALEQPFDFTAVPK
ISKEQALEAARHSRKDAIDSVAMASEASGVASTSAAVPSASETQSAYEKQLTEVPEFASY
GPVFKSTRKPVELTERETEYVVSAVKHVFAEHVVFQFNVRNTVDAVHLENVVVVMQPSEE
ADLTEDFIIPVASLGPNSDGVVYVSFTRNNPSTYATGSFGNTLRFLSKEIDPDTGEPEED
GYDDEYSLEELDLGAADYIVPSYAAFATEWDRLRSGATAQETFALTALDSLKTACDSLIE
ILGMEALGGTEAPTSPTVHTLNMSGLVAGGGGKVLARARMTFQTGKGVTMELTVRAEEEG
AAQLVINAIA